Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04299 ATGGACTTCAACAATCTTTTCTTGTTCTTCATGTTTCAATTCATCTTAATTACTGGTTGCAGTAGTTCAGGGGTGCGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATTGTCCAAGTTAATATATCAAACCCAGAAGGACATGTCATTGGAATTCAATATAATGGAATTGATAATTTGCTTGAAGTTCAAAATAAAGAATCTGATAGAGGGTATTGGGATATTGTATGGGAGCAGGGTGGGGAAAAAAGAACTGAAAAAGGAGTAAAGAAAAAGGGAATTTTGGACAGGATGGAAACAAATAATTTGACGGTGATAGTGGAAAATGAAGAACAAGTAGAGTTATCTTTCACTAGAATATGGAATTTCTCTCTTGAGGGAAAGCTTGCACCACTCAATTTTGATAAAAGGTTTATAATGCTTCGTGATTCTTCTGGATTTTATACATATGCAATTTATGAGCATTCGAAGGAATGGCCAGCTTTTGATCTTGACAATACCAGGGTTGCATTTAAGCCTAGAAAAGATAAGTTCAATTACATGGTTATAGCGGATGACAGACAAAGATTTATGCCTCTGCCGGATGACCGGTTACCAGGAAGAGGCGAAGTTCTGGCTTACAAAGAGGCCGTCCGTCTTGTCAATCCGGTGGAGCCAGAGTTCAAAGGAGAAGTTGATGATAAATACGAGTACTCAATTGAGAGTCGAAAAAATCAAGTTCATGGTTGGATTTCCATAAACTCGTCAGAATCAAAATCAACTGGATTCTGGATAATTACTCCTAGTAATGAATTCAGATCTGCTGGACCCTTAAAACAATACCTTGCTTCCCACGTTGGGCCTACCTCACTATCTGTATTTCATAGCACACATTATTCAGGGGCAGATTTGATCATGGAATTTGGAGTAAATGAGCCATGGAAGAAAGTCTTTGGGCCTATATTTATATATCTTAACTCTGACTCTGATGGGCTTAGCCCAATCAACCTCTGGGAAGATGCCAAACACCAGATGGTGAATGAAGTTGAAAGCTGGCCCTATACTTTTCCTGCTTCAAAGGACTTTCTTTCATCTGCCCAAAGAAGTAAAGTTGAAGGTAGATTGCTTGTTCGAGATAGGTTCATCGGTGATGCATTTGTTCCGGTCAAAGGTGCTTATGTGGGATTAGCACCACCAGGAGATGTTGGCTCATGGCAAGCAGAATGCAAGGGTTATCAATTTTGGACTATTACTGATGATAAAGGCTATTTCTCAATAATTAACATACTTCCTGGTGACTATAATCTGTTTTCTTGGGTTAATGGATTCATCGGTGATTATCAATATGACAAGGTCATTAACATAACCTCAGGTAGTGAAATTAAACTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAGATAGGTATCCCCGATCGATCGGCGGCTGAGTTTTATATTCCTGATCCAAATCCTTTGTATGTGAACAAACTTTACCTCAACCATTCAGACAGATATAGGCAATATGGTTTGTGGGAGAGATATGGTGAACTGTATCCAAAAGAAGATCTAGTTTACAATGTTGGCACTAGTGATTACAAAAAAGATTGGTATTTTGCTCAGAATACCAGGAAGAAAGACAACAACACTTACGAAGGAACTACATGGCAAATTAATTTCAATCTTGATCATGTGAATACCAATGGTACCTATAAATTGCGACTAGCTCTGGCATCCGTTCATTTTGCAGAGTTACAGGTTCGCATAAACAATTCCGATGCGAATCCAGCTCTATTTACAACTGAAGTTATAGGAAAGGATAATACTATAGCAAGACATGGAATTCATGGAATGTACAGATTATACAATGTTGATGTACAAGGAAGTCTTCTTGTGAAGGGAAACAATACCATCTTTCTAACACAAGCTAGCAGCAATGGTCCTTTTGTAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCCCTCAAATACATTTTACAGATCAATTAGATATCTTTTGA 2028 0.3817 MDFNNLFLFFMFQFILITGCSSSGVRLDIQDKHVIMDNGIVQVNISNPEGHVIGIQYNGIDNLLEVQNKESDRGYWDIVWEQGGEKRTEKGVKKKGILDRMETNNLTVIVENEEQVELSFTRIWNFSLEGKLAPLNFDKRFIMLRDSSGFYTYAIYEHSKEWPAFDLDNTRVAFKPRKDKFNYMVIADDRQRFMPLPDDRLPGRGEVLAYKEAVRLVNPVEPEFKGEVDDKYEYSIESRKNQVHGWISINSSESKSTGFWIITPSNEFRSAGPLKQYLASHVGPTSLSVFHSTHYSGADLIMEFGVNEPWKKVFGPIFIYLNSDSDGLSPINLWEDAKHQMVNEVESWPYTFPASKDFLSSAQRSKVEGRLLVRDRFIGDAFVPVKGAYVGLAPPGDVGSWQAECKGYQFWTITDDKGYFSIINILPGDYNLFSWVNGFIGDYQYDKVINITSGSEIKLGELVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPLYVNKLYLNHSDRYRQYGLWERYGELYPKEDLVYNVGTSDYKKDWYFAQNTRKKDNNTYEGTTWQINFNLDHVNTNGTYKLRLALASVHFAELQVRINNSDANPALFTTEVIGKDNTIARHGIHGMYRLYNVDVQGSLLVKGNNTIFLTQASSNGPFVGILYDYIRLEGPPQIHFTDQLDIF 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04299 675 Pfam Polysaccharide lyase family 4, domain III 472 660 IPR029411 -
Vifa2g04299 675 Gene3D - 470 661 - -
Vifa2g04299 675 FunFam Rhamnogalacturonate lyase B 360 459 - -
Vifa2g04299 675 SUPERFAMILY Galactose-binding domain-like 469 661 IPR008979 -
Vifa2g04299 675 SUPERFAMILY Starch-binding domain-like 384 458 IPR013784 GO:0030246
Vifa2g04299 675 CDD RGL4_N 30 326 - -
Vifa2g04299 675 Pfam Rhamnogalacturonate lyase family 23 228 IPR010325 -
Vifa2g04299 675 Gene3D - 27 316 IPR014718 GO:0030246
Vifa2g04299 675 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 30 664 - -
Vifa2g04299 675 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
Vifa2g04299 675 CDD RGL4_C 474 661 - -
Vifa2g04299 675 CDD RGL4_M 363 462 IPR029413 -
Vifa2g04299 675 SUPERFAMILY Galactose mutarotase-like 33 325 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04299 Vifa-Chr2 1263586664 1263590320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04299 21 668 Polysaccharide Lyase AT1G09880 62.519 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04299 K18195 - gmx:100786488 1088.94