Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04298 ATGGCTACACTAGGGGTTCAACTCATCATTCAAGATCATCATGTGGTCATGGACAATGGCATATTAAAAGTAACTTTATCAAATCCTGATGGAGTTGTCATTGGAATTGAGTATAATGGCATTGACAACTTGCTTGAAGTCTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGAAAATTTGATGTGATAAAGGGAAGCACATTCAAAGTTATATTGGAGGATGAAGATCAACTTGAGTTATCCTTCACTAGGACATGGGATACCTCCCTAGAGGGCAAGTTGGTTCCATTAAATATTGATAAAAGGTTTATAATGCTTCGCGGTTCATCCGGCTTCTACTCTTATGCAATTTATGAACACTTGGAGGATTGGCCTGCTTTTAATCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCAATATATGGCAATGGCAGATAATAGACAAAGGAATATGCCTCTTCCAGATGACAGAATACCACCAAGAGGCCAACCACTTGCCTATCCAGAAGCAGTTCTACTCGTTGATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGTGACAACAAAGATAGTCAAGTTCATGGATGGATTTGCAAGGATCCTGCTGTTGGATTCTGGCTCATTACGCCTAGCAATGAATTTCGATCCGGTGGACCTGTCAAACAAAACCTAACTTCCCACGTGGGACCTACCACACTTTCCGTGTTTCTTAGTGCGCATTATAGCGGAGAGGATTTAGTGCCAAAGTTCAAAGCTAACGAGGCATGGAAAAAAGTTTTTGGTCCAGTTTTTATCTATGCCAATTCTCCGTATAATGATTATGATGACCCAATTAAGCTATGGGATGATGCTAAACTTCAGATGTTAGTTGAAGTTCAAAGTTGGCCCTACAATTTTCCTGAATCAGGAGATTTCCCAAAATGGGACGAACGGGGTAACATTAGTGGCAGATTAATGGTTAAAGAGAGGTTTATAGACGATGATGATTATTTATCAGCAAAATATGCGTATGTTGGCTTGGCTACACCAGGAGATGTAGGTTCTTGGCAAAGAGAAAGCAAAAATTATCAGTTTTGGACTCAAGCGGACGATGATGGCTATTTCTCTATCAACAATATTCGGGCAGGCGACTATAATGTTTATGCATGGGTGCCTGGTTTTATTGGTGATTATAAATATGATGTAGTAGTTACCATAACAGAAGGTTGTGACATAGATATTGGTGATCTTGTTTATGAGCCACCAAGAGATGGACCGACATTGTGGGAAATAGGCATCCCTGATCGCTCGGCTGCTGAGTTCTATGTTCCCGATCCAAATCCTAAATATATCAACAAACTATATGTTGATCATCCTGATAAGTTTAGGCAATATGGGATATGGGAGAGATATGCAGAACTATACCCTGAAAAAGATTTGATCTACACCATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACTAGGAAGAAAGAAGATAATACATATCAAGGAACCACTTGGCAAATCAAGTTTAATCTTGATAATGTGAACAAAAAAGATAGATATAAACTTCGAGTCGCTTTGGCATCAGCTACATATTCAGAACTTCAGGTACGAGTTAACGACTCGAAAGCAAATCGCCCTATATTTTCAAGTGGGTTGATTGGGAAGGATAACTCAATTGCTAGACATGGAATTCATGGACTTTATTGGCTCTACAATATTGACATACAAGGTTCTTTACTTGTTGAAGGAGATAACAATACCATCTTTTTGACACAAACAAGAAGCAATGGTCCATTTCAGGCAATTATGTATGATTATATTCGTTTGGAAGGTCCAGCAAATTCTAGTTTCAATAAGAAAATTTGA 1941 0.3869 MATLGVQLIIQDHHVVMDNGILKVTLSNPDGVVIGIEYNGIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGKFDVIKGSTFKVILEDEDQLELSFTRTWDTSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFQYMAMADNRQRNMPLPDDRIPPRGQPLAYPEAVLLVDPIEPELKGEVDDKYQYSCDNKDSQVHGWICKDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLSVFLSAHYSGEDLVPKFKANEAWKKVFGPVFIYANSPYNDYDDPIKLWDDAKLQMLVEVQSWPYNFPESGDFPKWDERGNISGRLMVKERFIDDDDYLSAKYAYVGLATPGDVGSWQRESKNYQFWTQADDDGYFSINNIRAGDYNVYAWVPGFIGDYKYDVVVTITEGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVDHPDKFRQYGIWERYAELYPEKDLIYTIGVSDYTKDWFFAQVTRKKEDNTYQGTTWQIKFNLDNVNKKDRYKLRVALASATYSELQVRVNDSKANRPIFSSGLIGKDNSIARHGIHGLYWLYNIDIQGSLLVEGDNNTIFLTQTRSNGPFQAIMYDYIRLEGPANSSFNKKI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04298 646 SUPERFAMILY Galactose mutarotase-like 13 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vifa2g04298 646 Pfam Polysaccharide lyase family 4, domain III 445 634 IPR029411 -
Vifa2g04298 646 Gene3D - 334 432 - -
Vifa2g04298 646 CDD RGL4_C 447 635 - -
Vifa2g04298 646 Gene3D - 443 635 - -
Vifa2g04298 646 Gene3D - 7 295 IPR014718 GO:0030246
Vifa2g04298 646 Pfam Polysaccharide lyase family 4, domain II 359 431 IPR029413 -
Vifa2g04298 646 CDD RGL4_M 335 435 IPR029413 -
Vifa2g04298 646 CDD RGL4_N 14 294 - -
Vifa2g04298 646 SUPERFAMILY Galactose-binding domain-like 442 635 IPR008979 -
Vifa2g04298 646 SUPERFAMILY Starch-binding domain-like 379 431 IPR013784 GO:0030246
Vifa2g04298 646 Pfam Rhamnogalacturonate lyase family 10 203 IPR010325 -
Vifa2g04298 646 FunFam Rhamnogalacturonate lyase B 332 432 - -
Vifa2g04298 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04298 Vifa-Chr2 1263379041 1263382637 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04298 1 638 Polysaccharide Lyase AT1G09890 69.484 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04298 K18195 - gmx:100793563 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04298 2 1263379041 1263382637 Vifa2g04298 2 1263379041 1263382637 ECH