Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04296 ATGTCTTCCCCAGGAGTGCAGTTACACATCCAACGACACCATGTGGTGATGGATAATGGTATTGTCCAAGTTACATTATCAAAACCAGATGGAATTGTCACTGGAATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAATAAGGAGACTAATAGAGGGTATTGGGATCTTGTTTGGAGTGCACCAGGAGTCAAAGGGGGCTTTGATGTGATTAAAGGAACATGTTTCGAAGTTATAGTTCAAAACGAGGATCAAGTGGAGGTATCATTCAAAAGAATGTGGGATCATTCTCTTGAGGGAAAGTATGTCCCCTTAAATATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCGGGCTTCTACTCTTATGGAATTTATGAGCACTTACACGGATGGCCAGATTTTGATCTTACTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAGTACATGGCTATGGCTGACAATAGGCAAAGGATTATGCCTTTTCCAGAAGATCGGATGCCAGGAAGATGCCAACCCTTAGCCTACCAAGAAGCTGTTCTACTAGTCAATCCTAAGGATCCACAATTGAAAGGGGAGGTGGATGACAAGTATCAATATTCATGTAAAAATATAGACAATAAAGTCCATGGGTGGATATCTTTCAACCCACCCGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCTTCAAGCAGAACTTGACCTCTCATGTAGGACCCACCACACTGGCCATGTTTTTTAGTGGTCACTATGCTGGACAAGATTTGATACCCAAATGGAGAGGTGGTGAACCATGGAAGAAAGTTTTTGGTCCTGTATATATTTATCTCAATTCTGGACCAACCGGTGGTGACCCGCTCGGGCTATGGGAGGATGCAAAAATAAAGATGGCAACCGAAGTTCAAAGCTGGCCATATTTATTCCCCGCTTCAGAGGATTTTTTAAAACCAGATCAACGGGGCAATGTTAATGGCAGATTACTTGTATTAGACAGGTACATCAGCACTGACTTAATACCAGCAAATGGTGCTTATGTTGGCCTGGCTCCACCGGGAGATGCAGGATCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGTGAATGGATTTTTTACGATTAGGAATGTACTTCCTGGTGACTACAACCTTTTTGCCTCGGTACCTGGTTTTGTTGGAGACTACAAATTCGGTGATTTTGTGAAGATAACCTCAGGTTCTTACATTGAAATGGGAGAACTTGTATATGAACCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCCGCAGAATTTTACGTTCCTGATCCCAATCCACAATACATTAATAAGCTTTTTATAAACCATCCCGACAGGTTCAGGCAGTATGGATTGTGGGACAGATATTCAGAATTATATCCTGATGCGGATTTGGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTATGCTCATGTTCCCAGAAAAAGAGAGGATAACAATCATGTAGGAACAACTTGGCAAATCAAGTTTGAACTCAGTGGTATTAATCAAGGAACTACATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGGTTCGAGTCAATGATCCCAACGCAGGGCGTCCCGTATTTACCACTGGATTAATAGGAAGGGAGAACTCAATTGCAAGACTCGGAAGTCATGGACTTTATTGGCTGTACCATGTGAACATACCAAGTTCTCTTCTTGTTGATGGCTCAAATACTATATATTTTACACAGCCAAGATGCACCAGTCCTTTCCAGGGTTTGATGTATGACTATATTCGTTTGGAAGGACCTCCTTGTTCTTAA 1905 0.4178 MSSPGVQLHIQRHHVVMDNGIVQVTLSKPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGVKGGFDVIKGTCFEVIVQNEDQVEVSFKRMWDHSLEGKYVPLNIDKRFILLRGSSGFYSYGIYEHLHGWPDFDLTETRITFKLRKDKFQYMAMADNRQRIMPFPEDRMPGRCQPLAYQEAVLLVNPKDPQLKGEVDDKYQYSCKNIDNKVHGWISFNPPVGFWQITPSDEFRSGGPFKQNLTSHVGPTTLAMFFSGHYAGQDLIPKWRGGEPWKKVFGPVYIYLNSGPTGGDPLGLWEDAKIKMATEVQSWPYLFPASEDFLKPDQRGNVNGRLLVLDRYISTDLIPANGAYVGLAPPGDAGSWQRECKDYQFWTRADVNGFFTIRNVLPGDYNLFASVPGFVGDYKFGDFVKITSGSYIEMGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLFINHPDRFRQYGLWDRYSELYPDADLVYTIGVSDYRKDWFYAHVPRKREDNNHVGTTWQIKFELSGINQGTTYKLRVAIASATLAELQVRVNDPNAGRPVFTTGLIGRENSIARLGSHGLYWLYHVNIPSSLLVDGSNTIYFTQPRCTSPFQGLMYDYIRLEGPPCS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04296 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
Vifa2g04296 634 SUPERFAMILY Galactose mutarotase-like 16 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vifa2g04296 634 Pfam Rhamnogalacturonate lyase family 7 200 IPR010325 -
Vifa2g04296 634 SUPERFAMILY Starch-binding domain-like 352 427 IPR013784 GO:0030246
Vifa2g04296 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Vifa2g04296 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Vifa2g04296 634 Gene3D - 329 425 - -
Vifa2g04296 634 Gene3D - 438 629 - -
Vifa2g04296 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 632 - -
Vifa2g04296 634 Gene3D - 6 303 IPR014718 GO:0030246
Vifa2g04296 634 CDD RGL4_C 442 629 - -
Vifa2g04296 634 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
Vifa2g04296 634 CDD RGL4_N 14 294 - -
Vifa2g04296 634 CDD RGL4_M 331 430 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04296 Vifa-Chr2 1263249435 1263255110 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04296 1 632 Polysaccharide Lyase AT1G09910 70.095 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04296 K18195 - gmx:100814185 1182.16