Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04291 ATGATCACAAATCATCCACTCCTAATCCTTTTATTATCCCTAATCTTTCTCCCACTAGTTAATTCTCAAGTTAATTACCGATACTGCAACCGAACATGTGGTTCATCCGAACCCTCCCCTTATCCATTCGGATTCTCTTCCGGCTGCGAAATTCGCCTCAACTGCACCATCGACGGTGGAATCTTCATCGGTGAATTCCCAATCCAAACAATAACCTCCAATAGTATAATAGTAAACATCAAAGCACAATGTAATCGTCCATTTGAAAAGTTCCACCAGCTCTTCAGCCACAAATACGCACCTACTTCCGGAAACGTGATTCTGTTACAGAACTGCACGGATAATCTCTTGCCTTGTTCTATACCGGAGACTCTGCTTCCGAATCGATTCGAATCGGAATCTAACGGCTGTGGTGACATCTCCGGTAGCGGCGGTGGAAAATTGAGTTGTTATTTTGAAAATAATACGAGGCGTTTCGTGGATGAGAAAAGGTTGGAGCGAATCGGGTGTGAGTACTTTATGTCTTCTATATCAACGGACAATTTGACGAAGAATTTGGATTCGGCGGTTTCTTTGGAAGTGGCTACGATTGAGCTTGGATGGTGGCTTCACGGAGATCGGTGTCTTTGTTCTGATCATGCTAATTGTACTGAAATTGAGTCGCCGATTGATGGAAAGCTAGGGTTTCGGTGTGGATGTAAGGAAGGATTTGTCGGCGATGGTTTTTTGGCCGGAAATGGATGCCGGAAAGCCTCCTCATCAACATGCAATCCAACAAAATACATGTCTGGAAGATGTGGAGGAAGAGCTAGGTTCATTGTCTTAATTGGAGGGTTTGTTTTTGGTGTTTCAATGATGATTACTCTGGGTTCAGTATGTTGTTACTTTCGCCGACGCACCAAATTGAGAATCACAAAGAGCACAAAAAGACGCTTCACCGAAACTACTAACAATTACAGCATTCCTATCTATCCCTACAAAGACATTGAAAAAGCCACAAATAGTTTCTCAGAGAAACAAAGGTTGGGAACCGGTGCATATGGTACAGTTTATTCTGGAAAACTATACAATGATGAATATGTCGCCATCAAAAGAATAAAACACAGGGACAATGAAAGCATTGAACAAGTCATGAATGAGATCAAGCTAATTTCCGCTGTTAGTCACCCGAATTTAGTGCACTTGTTGGGCTGTTCCATTGAATATGGAGAACAAATCTTGGTGTATGAGTTCATGCCTAATGGAACACTGAGTCAACATTTGCAAAGAGAAAGAGGAAATGGACTTTCATGGCCTGTTAGACTCAAAATTGCAACAGAAACAGCACAAGCCATAGCTCATCTTCATTCAGCAATTAGTCCACCTATTTACCATAGAGATATCAAATCAAGTAACATACTTTTGGACCGCAATTTCGGATCCAAAGTAGCAGATTTCGGGCTTTCTAGACTAGGAATAACAGAAATATCTCATGTTTCAACTGCGCCACAAGGAACCCCTGGCTACGTCGACCCACAATATCATCAAGATTTTCACCTTTCTGATAAAAGCGATGTATATAGCTTCGGTGTTGTTCTTGTTGAGATCATAACAGGACTAAAAGCAGTTGATTTTTCTCGTCCTCATAATGAAGTTAACTTGGCGTGTCTTGCTGTTGACAGAATCAGAAAAGGGCTGTTAGTTGATATTATAGACCCAATAATATTTCTTGATCCCCAAGCAAGCCATGATGGGTGGACACTTTCCTCCATACACAAGATAGCTGAGGTGGCATTTAGATGTCTTGCATTTCACAGGGATATGAGACCTTGTATGACAGAAGTAGCAACTGAGTTAGAGCAACTAAGGTTGAATGACAGGAACTCTTTCAAAGAAAACAACTCCATTATAGCTTCAATAGATCACATATCTTCATGCTCTTCTTCTAGCGAAAGTGAGAAGCCTTTGAGTACCACTGCCTTGAAGAACGCCGCGCCTAAGGATAAAGGTCATCTTAACCTCGAGACTAGACCCGTTTCTTTTAAGTCGATTGGTAGGCTCAATAGTAGCTCACCGGTTTCGGTTCAAGACCCAGACCCATGGTTTAGTGAGCAGAGTTCTCCTTCGTCAAGTAGTTTCCCCAGCAAGTCATTTGATCACGGATCAGACTCATATGGTCAACAAACTAGTTTGTAG 2175 0.4184 MITNHPLLILLLSLIFLPLVNSQVNYRYCNRTCGSSEPSPYPFGFSSGCEIRLNCTIDGGIFIGEFPIQTITSNSIIVNIKAQCNRPFEKFHQLFSHKYAPTSGNVILLQNCTDNLLPCSIPETLLPNRFESESNGCGDISGSGGGKLSCYFENNTRRFVDEKRLERIGCEYFMSSISTDNLTKNLDSAVSLEVATIELGWWLHGDRCLCSDHANCTEIESPIDGKLGFRCGCKEGFVGDGFLAGNGCRKASSSTCNPTKYMSGRCGGRARFIVLIGGFVFGVSMMITLGSVCCYFRRRTKLRITKSTKRRFTETTNNYSIPIYPYKDIEKATNSFSEKQRLGTGAYGTVYSGKLYNDEYVAIKRIKHRDNESIEQVMNEIKLISAVSHPNLVHLLGCSIEYGEQILVYEFMPNGTLSQHLQRERGNGLSWPVRLKIATETAQAIAHLHSAISPPIYHRDIKSSNILLDRNFGSKVADFGLSRLGITEISHVSTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKAVDFSRPHNEVNLACLAVDRIRKGLLVDIIDPIIFLDPQASHDGWTLSSIHKIAEVAFRCLAFHRDMRPCMTEVATELEQLRLNDRNSFKENNSIIASIDHISSCSSSSESEKPLSTTALKNAAPKDKGHLNLETRPVSFKSIGRLNSSSPVSVQDPDPWFSEQSSPSSSSFPSKSFDHGSDSYGQQTSL 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04291 724 SMART serkin_6 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04291 724 Gene3D Transferase(Phosphotransferase) domain 1 412 654 - -
Vifa2g04291 724 Gene3D Laminin 209 243 - -
Vifa2g04291 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vifa2g04291 724 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 693 IPR044652 GO:0004672
Vifa2g04291 724 ProSiteProfiles Protein kinase domain profile. 336 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04291 724 MobiDBLite consensus disorder prediction 676 724 - -
Vifa2g04291 724 FunFam Wall-associated receptor kinase-like 14 isoform A 208 243 - -
Vifa2g04291 724 Pfam Protein kinase domain 336 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04291 724 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vifa2g04291 724 FunFam Wall-associated receptor kinase-like 20 412 625 - -
Vifa2g04291 724 SUPERFAMILY Protein kinase-like (PK-like) 311 613 IPR011009 -
Vifa2g04291 724 FunFam Wall-associated receptor kinase-like 14 303 411 - -
Vifa2g04291 724 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04291 Vifa-Chr2 1261470322 1261479948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04291 1 706 Receptor kinase-like Gene Family AT2G23450 49.304 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa2g04291 PK_Tyr_Ser-Thr 4.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04291 - - tpra:123893607 1152.5