Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04281 ATGGCCATCGCAACAGAAACTCATCAATCTCACCCTCAACAACATACGGCTTCGTCGGAGTATTCAGGTTCAGCTCAGGAGCAAAAGAGATGGACTCTAAATGATTTTGATATTGGAAAACCACTCGGAAGGGGGAAATTCGGCCATGTCTATTTGGCCAGAGAAAAATCTAGTAATCATATTATTGCTCTGAAAGTACTTTTTAAGACCCAATTGCAACAATCCCAAGTTGAGCATCAGCTTCGCCGAGAAGTTGAAATTCAGAGTCATCTGAGACATCCACATATCTTGCGACTATATGGATACTTTTATGATCAGAAACGAGTTTATTTGATTTTAGAGTATGCACCTAAAGGTGAACTTTACAAGGAATTGCAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTTATGTTGCGTCATTGGCCCGAGCCCTTATATATTGCCATGGAAAGCATGTAATTCATAGGGACATTAAACCAGAGAACCTTCTTATTGGTGCTCAGGGTGAATTGAAGATTGCGGATTTCGGATGGTCAGTACACACATTCAACCGCAGGAGGACCATGTGTGGCACCCTGGATTACCTTCCACCCGAGATGGTGGAGAGTGTAGAACATGATGCAAGTGTGGATATATGGAGCCTTGGTGTTCTTTGCTATGAGTTTCTTTACGGAGTCCCCCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGAAGGATAATACAAGTGGATCTTAAGTTCCCTCCTAAACCAATTGTTTCATCTGCTGCGAAGGACCTCATTAGCCAGATGCTGGTCAAGGATTCCTCTCAACGATTACCGTTGCACAAACTGCTAGAACATCCCTGGATTGTTCAGAATGCAGAGCCATCCGGTATATATAGGGGCTAA 900 0.4256 MAIATETHQSHPQQHTASSEYSGSAQEQKRWTLNDFDIGKPLGRGKFGHVYLAREKSSNHIIALKVLFKTQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIIQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGIYRG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04281 299 PIRSF ILK 3 284 - -
Vifa2g04281 299 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Vifa2g04281 299 FunFam serine/threonine-protein kinase Aurora-1 120 295 - -
Vifa2g04281 299 FunFam Aurora kinase A 28 119 - -
Vifa2g04281 299 ProSiteProfiles Protein kinase domain profile. 36 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04281 299 Gene3D Phosphorylase Kinase; domain 1 23 119 - -
Vifa2g04281 299 CDD STKc_Aurora 35 288 - -
Vifa2g04281 299 SUPERFAMILY Protein kinase-like (PK-like) 17 291 IPR011009 -
Vifa2g04281 299 Gene3D Transferase(Phosphotransferase) domain 1 120 295 - -
Vifa2g04281 299 MobiDBLite consensus disorder prediction 1 24 - -
Vifa2g04281 299 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 12 295 IPR030616 GO:0004672
Vifa2g04281 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vifa2g04281 299 SMART serkin_6 36 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04281 299 Pfam Protein kinase domain 38 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04281 Vifa-Chr2 1258290924 1258292898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04281 11 290 CBL-interacting serine-threonine protein kinases AT5G25110 33.566 6.02e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vifa2g04281 Pkinase 6.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04281 K08850 - gmx:100803678 578.941