Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04276 ATGTCTGAACTACCCTTCTTCGTCTTGAAATTTCCCATTTATTTGTTCCTCTTGCTGAGCTTCATAATACCCTTCAAAGTAATTTCACAACCTACAAACTCCGAAGAAACTATACTCCTCACTCTGAAACGTCAACTCGGTGATCCACCGTCGCTCCAGTCATGGAAACCGTCACCGTCTTCGCCGTGCAACTGGCCGGAGATAAACTGCACCGGCGGATTCGTCACGGAGCTTCTCCTCCCGAACAATAACATCACCACACAGAAACTCCCTTCCATAATCTGCAACCTCAAGAACCTCACTAAGCTTGACCTCTCCAACAACTCCATCGCCGGGGAGTTTCCGACGTGGCTTCACAACTGCTCCAACCTCCGGTACCTCGACCTGTCGCAGAATTACTTCGCCGGACAAATCCCCGACGATATCGGTAGCATCGAAAAACTCACCTACCTCAACCTCGCCGCCAACAGCTTTACCGGCGATATCCCGGCGGCGATCGGGAAACTCTCGAACCTACAAACACTTTACCTCCTTCAAAACAACTTCAACGGAACAATTCCGAAGGAAATCGGAGACTTATCAAACCTTGAAACCCTCGGATTAGCTGATAACTTCAGACTCAAACCAGTGACAATTCCGTTGGAGTTCGGAAAATTGAAGAACTTGAAATTTATGTGGATTTCAAAGTGTAACTTGGTCGGAACCATTCCAGAAAGCTTCGTGAATCTCACTAATCTTGAACACTTGGATTTATCAACCAACAATTTAACAGGAAACATACCTAGAAGTTTCTTCTCCCTGAAGAAATTGACCTATTTGTATCTTTACCTTAATAGGTTCGTTGGTGTGATACCTGATTCAGTTCAGGCTTTGAGTTTAACCGAAATCGATTTGTCGATGAACAATTTAACCGGTTTGATACCAAAAGAATTTGGTAAGTTGCAGAATTTGACTGTTCTGCAATTGTTTTCAAATCAGTTATCTGGTGGGATTCCTATCAGTTTAGGGCTAATTCCAAGTTTGAGGATCTTTAAGGTTTTTGAAAATAAGTTGAATGGAACGCTACCTTCAGAGTTAGGAAGGTATTCAAAGCTTGTGGTGTTTGAAGTTGGTGCAAATCAACTCATTGGTGGGTTGCCAGAACATCTGTGTGAAGGTGGTGTTTTGATCGGGGTAACTGCTTTTTTGAATAATCTCAGTGGAAAGTTACCAAGTTGGTTTGAGAATTGTGTTTCTCTTACCACTGTTGAGCTTTACAGTAACAGATTTTCAGGGGAAGTTCCTTTGGGTTTGTGGAATTTGACGAAATTGTCGACGTTGATGTTAAGTGATAACTTGTTTTCTGGTGAACTTCCGAGTAAATTATCATGGAACATGTCTAGACTTGAGATTAGAAACAACAACTTTTCAGGTCGGATATCTCTTGGAATTTCTTCTGCTTTGAATTTGGTAGTTTTTGATGCAGGAAACAACTTGTTTTCTGGTGAGGTTCCGAGGGAATTAACGGGTTTATCGCAGCTCATTACTCTCATGCTTGATGGTAATAAACTCTCTGGAACACTTCCGTCCGAAATAATATCGTGGCTGTTGCTTAATACTCTAAATATCTCGAGAAACAAAATTACGGGTCGAATACCTGTAGCTTTGTCTTCTCTTCCTAGCCTTAACTACTTGGATTTATCTGAAAATAACTTAACCGGTGAAATCCCATCTCAGCTTGTGAATTTGAAGCTTAATTTTCTTAACTTGTCTTCCAACAAGCTTACAGGAAACATCCCTGATGAGTTTGAGAATCTTGCATACGAAAACAGTTTCTTGAACAATCCTCAACTATGTGCACATAATGAAAATTTCAACCTTTCAAGCTGCTTGACAAAAAGCACACCACAACACTTCAAAAATCATTCATTTTTGAAATCAAAACTCTTTACTCTGATTGTTGCTGTTACTGTTGCTGTGTTGCTAGCCACAGCTTCTTTGGCTTTCTGCGCGTTGAAAAAGCATTGCGGCAAAAAGCACTGCGGGCGTAAGCTTTCAACATGGAGGCTTACATCATTCCAGAGGTTTGATCTCACAGAAATAAATATCTTCTCAAGTTTGACAGATAATAACCTCATAGGAAGCGGAGGGTTTGGAAAAGTTTACCGGGTAGCTTCAACTCGTCCCGGTGAGTACATTGCAGTGAAGAAGATTTGGAATGTCAAGAATGTGGATGACAAACTGGATAAAGAATTTATGGCTGAGGTTGAAATTCTGGGTAATATTAGGCATTCCAATATAGTGAAGCTTTTGTGTTGTTATTCAAGTGAGAACTCTAAACTTCTTGTTTATGAATACATGGAAAATCATAGCCTGGACAAATGGCTTCATAAAAAGAAGAAAACATCAGTCTCTGGATTGAGCTCACACACTGGGAATCAAATGGTGTTGAGTTGGCCAACAAGGTCAAACATTGCCATTGGTGCTGCACAAGGCCTGTGTTACATGCATCATGAATGTTCAATGCCAATAATTCACAGAGATGTCAAATCGAGCAATATATTGCTTGACTCTAAGTTCAAGGCGAGTATAGCAGATTTTGGGCTCGCCAAGATATTGGCAAAGAATGGGGAATCATACACCATGTCTGTTTTAGCAGGGTCTTTCGGCTACATTCCACCAGAATATGCATATTCTACCAGGATCAATGAGAAAGTCGATGTGTATAGCTTTGGAGTTGTACTACTAGAGCTTGTGACGGGAAGGGAGCCTAATTATGGAGGCGAGAAAGCGTGCAGCCTGGTTGATTGGGCATGGCGGCATTGTGATGAAGGAAAATGTATCACTGATGCCTTTGATGAGGATATCAGAGATACACCCTATGCAGCAGAGATGACTAGCGTCTTCAAATTAGGCCTCATGTGCACAAGTACGTTACCCTCCACTAGACCTTCAACAAAGGAGATTTTACAAGTTCTTCGGCAGTGTTGTTCTTCAAGTTCCGCTTATAGAAGAGTGCCAACTGAATTTGAGATCACTCCTCTTCTTGGCAATAGAACTTACATTTCTAGTTACAAGGATGGTAGAACTGCAAATGAAAATGAAGAAAGCTGCTTATATAGTGTGTAA 3108 0.4125 MSELPFFVLKFPIYLFLLLSFIIPFKVISQPTNSEETILLTLKRQLGDPPSLQSWKPSPSSPCNWPEINCTGGFVTELLLPNNNITTQKLPSIICNLKNLTKLDLSNNSIAGEFPTWLHNCSNLRYLDLSQNYFAGQIPDDIGSIEKLTYLNLAANSFTGDIPAAIGKLSNLQTLYLLQNNFNGTIPKEIGDLSNLETLGLADNFRLKPVTIPLEFGKLKNLKFMWISKCNLVGTIPESFVNLTNLEHLDLSTNNLTGNIPRSFFSLKKLTYLYLYLNRFVGVIPDSVQALSLTEIDLSMNNLTGLIPKEFGKLQNLTVLQLFSNQLSGGIPISLGLIPSLRIFKVFENKLNGTLPSELGRYSKLVVFEVGANQLIGGLPEHLCEGGVLIGVTAFLNNLSGKLPSWFENCVSLTTVELYSNRFSGEVPLGLWNLTKLSTLMLSDNLFSGELPSKLSWNMSRLEIRNNNFSGRISLGISSALNLVVFDAGNNLFSGEVPRELTGLSQLITLMLDGNKLSGTLPSEIISWLLLNTLNISRNKITGRIPVALSSLPSLNYLDLSENNLTGEIPSQLVNLKLNFLNLSSNKLTGNIPDEFENLAYENSFLNNPQLCAHNENFNLSSCLTKSTPQHFKNHSFLKSKLFTLIVAVTVAVLLATASLAFCALKKHCGKKHCGRKLSTWRLTSFQRFDLTEINIFSSLTDNNLIGSGGFGKVYRVASTRPGEYIAVKKIWNVKNVDDKLDKEFMAEVEILGNIRHSNIVKLLCCYSSENSKLLVYEYMENHSLDKWLHKKKKTSVSGLSSHTGNQMVLSWPTRSNIAIGAAQGLCYMHHECSMPIIHRDVKSSNILLDSKFKASIADFGLAKILAKNGESYTMSVLAGSFGYIPPEYAYSTRINEKVDVYSFGVVLLELVTGREPNYGGEKACSLVDWAWRHCDEGKCITDAFDEDIRDTPYAAEMTSVFKLGLMCTSTLPSTRPSTKEILQVLRQCCSSSSAYRRVPTEFEITPLLGNRTYISSYKDGRTANENEESCLYSV 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04276 1035 SUPERFAMILY L domain-like 397 634 - -
Vifa2g04276 1035 Gene3D Phosphorylase Kinase; domain 1 683 779 - -
Vifa2g04276 1035 SUPERFAMILY L domain-like 40 377 - -
Vifa2g04276 1035 Pfam Leucine rich repeat 76 133 IPR001611 GO:0005515
Vifa2g04276 1035 Pfam Leucine rich repeat 147 204 IPR001611 GO:0005515
Vifa2g04276 1035 Pfam Leucine rich repeat 222 279 IPR001611 GO:0005515
Vifa2g04276 1035 Pfam Leucine rich repeat 531 588 IPR001611 GO:0005515
Vifa2g04276 1035 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Vifa2g04276 1035 FunFam Kinase family with leucine-rich repeat domain-containing protein 780 1002 - -
Vifa2g04276 1035 ProSiteProfiles Protein kinase domain profile. 700 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04276 1035 SMART serkin_6 700 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04276 1035 Gene3D Ribonuclease Inhibitor 394 632 IPR032675 -
Vifa2g04276 1035 Gene3D Transferase(Phosphotransferase) domain 1 780 1002 - -
Vifa2g04276 1035 SUPERFAMILY Protein kinase-like (PK-like) 692 986 IPR011009 -
Vifa2g04276 1035 SMART LRR_typ_2 434 458 IPR003591 -
Vifa2g04276 1035 SMART LRR_typ_2 97 125 IPR003591 -
Vifa2g04276 1035 SMART LRR_typ_2 243 267 IPR003591 -
Vifa2g04276 1035 SMART LRR_typ_2 552 576 IPR003591 -
Vifa2g04276 1035 SMART LRR_typ_2 169 193 IPR003591 -
Vifa2g04276 1035 SMART LRR_typ_2 504 528 IPR003591 -
Vifa2g04276 1035 PRINTS Leucine-rich repeat signature 293 306 - -
Vifa2g04276 1035 PRINTS Leucine-rich repeat signature 552 565 - -
Vifa2g04276 1035 ProSitePatterns Protein kinases ATP-binding region signature. 706 730 IPR017441 GO:0005524
Vifa2g04276 1035 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 211 981 - -
Vifa2g04276 1035 Gene3D Ribonuclease Inhibitor 32 185 IPR032675 -
Vifa2g04276 1035 Gene3D Ribonuclease Inhibitor 186 290 IPR032675 -
Vifa2g04276 1035 Gene3D Ribonuclease Inhibitor 291 388 IPR032675 -
Vifa2g04276 1035 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 625 - -
Vifa2g04276 1035 Pfam Protein kinase domain 702 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04276 1035 FunFam Receptor-like protein kinase HSL1 isoform A 32 184 - -
Vifa2g04276 1035 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vifa2g04276 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Vifa2g04276 1035 ProSiteProfiles Leucine-rich repeat profile. 245 267 IPR001611 GO:0005515
Vifa2g04276 1035 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 284 - -
Vifa2g04276 1035 FunFam Receptor-like protein kinase HSL1 680 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04276 Vifa-Chr2 1256331138 1256334322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04276 23 1013 Receptor kinase-like Gene Family AT5G25930 53.908 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa2g04276 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04276 - K00924 adu:107461025 1378.23