Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04275 ATGGTAGGGTCAGCAGTAGGGCAGCGGTTCCTAATTGTTGCGAAATTGCGGTCAGCTAGTGGGATTTTGCGGATAAATTCCTCATTTGTTTATGTTATGACAACCATTAATTTGTTGTCCAATACTTTTTTCTCGGCCGATTTTGTTCATTCGGCCGAGGAAGCTGGAGAGTATAAGGAGATTGTTGTGAGTATATTGAAGGAAGTTGGAGTGCCGAATTTGTCGGATTTTTTTCCCATGTTGAAGGTTTTTGATTTGCAGGGTATTAGAAGACGTTCTGTTGTTTCTATTAGAAAGGTTTTGACTATTTTTAGGAGATTTGTTGGGGAACGGTTGAAGTTGAGAGAAGGTACTGGTTCTATTGGAAATGATGATGTGCTTGATGCTTTGCTTAATATTTCTTTGGAGGATGGGAAAATTGAGATGGATAAAGATGAGATTGAACATTTGTTGCTGAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATCACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1071 0.3828 MVGSAVGQRFLIVAKLRSASGILRINSSFVYVMTTINLLSNTFFSADFVHSAEEAGEYKEIVVSILKEVGVPNLSDFFPMLKVFDLQGIRRRSVVSIRKVLTIFRRFVGERLKLREGTGSIGNDDVLDALLNISLEDGKIEMDKDEIEHLLLNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKSPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04275 356 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 30 352 - -
Vifa2g04275 356 Gene3D Cytochrome P450 11 353 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 289 298 IPR017972 GO:0005506|GO:0016705
Vifa2g04275 356 FunFam Geraniol 8-hydroxylase 97 349 - -
Vifa2g04275 356 PRINTS E-class P450 group I signature 286 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS E-class P450 group I signature 146 163 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS E-class P450 group I signature 34 52 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS E-class P450 group I signature 250 274 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS E-class P450 group I signature 296 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS E-class P450 group I signature 166 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 Pfam Cytochrome P450 24 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 SUPERFAMILY Cytochrome P450 25 349 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS P450 superfamily signature 157 174 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS P450 superfamily signature 296 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS P450 superfamily signature 210 221 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04275 356 PRINTS P450 superfamily signature 287 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04275 Vifa-Chr2 1255840182 1255841332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04275 25 352 Cytochrome P450 AT1G33720 46.084 8.34e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04275 - K23810 cave:132173603 403.29