Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04262 ATGGATGAGTATGATAGTGGTGGCGGAAGTGCTGATAAAGCTCCGGAAGCGGAGGAAGAAGGAAGCACTCCGCCACTTCCTGAGAAGGTTCAAGTTGGTGGTTCGCCGTTATATAGACTTGATAGGAAGCTTGGGAAGGGAGGGTTTGGACAAGTTTTTGTTGGAAGACGACTAGGAGCTGGTTCCGGTGCCGTTGAGGTAGCATTGAAATTCGAGCATAGAAGCAGTAAAGGGTGTAATTATGGACCTCCGCATGAGTGGCAGGTTTACAATACATTAGGCGGTAGTCATGGTGTTCCACGAGTACATTACAAGGGACGACAAGGTGACTACTATATTATGGTCATGGATATCCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCTACTGAAATGGTGGCATGTATTGCAATCGAGGCTATATCCATATTAGAGAAAATGCATTGTAAAGGATACGTGCATGGTGATGTAAAACCTGAAAACTTTTTGCTTGGACCCCCGGGAACCCCTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGTTGGCGTGATAATTCAACCGGCCTTCATGTTGATTATGATCAACGCCCAGATGTTTTTAGGGGCACAGTTCGTTACGCTAGTGTGCATGCCCATCTTGGTAGAACAGGTAGCAGGAGAGATGATTTGGAATCTCTTGCTTTCACGCTTGTCTTCCTTCTTCGTGGTCGGTTGCCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAAATGGCAACTTCTCCCGAAGCTTTGTGTTGCTTTTGTCCTGCACCTTTCCGGCAGTTTGTTGAACATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTTGATGGAATTGTGGGTCCAAATCCTGACATTAGGCCAATAAATACCGATGGTGCGCAGAAGCTTGTATGTCAAGTTGGACAAAAGAGAGGACGATTAACCATGGAAGAGGATGACAATGAACAGCCAAAGAAGAGGGTCCGAATGGGAACACCAGCAACACAGTGGATTAGTGTTTACAATGCTCGGAGACCAATGAAACAAAGGTATCATTACAATGTGGCCGATGAGCGGCTATCCCAACATATTGAAAAAGGGAATGAAGATGGTTTGTTTATCAGTAGTGTGGCTTCATGTGCTAGTCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACAGCACAAGTTTATGAGCTGTCTTCCAATTTTCTTCACAAGGAATGGATTATGGAGCAGTGGGATAAGAGTTACTACATCAGTGCCATAGCTGGAGCTTGTAATGGGTCCTCATTGGTTGTAATGTCAAAAGGGACCCAATACATGCAACAATCCTATAAAGTCAGCGACTCATTTCCATTTAAGTGGATCAACAAAAAATGGAAAGAAGGATTTTTCGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCTCGTGGAGTTGGATTTTCAGACCAGGTTGTGGAACTTGATTTCCTTTACCCTAGTGAAGGTATTCATCGAAGGTGGGAAAACAATTACCGCATCACCGCAACTGCTGCAACGCCTGATCAAGCCGCTTTTATTTTAAGTGTCCCTAGAAGAAAACCACCTGATGAAACACAAGAAACGCTCCGCACGTCTGATTTTCCAAGTACTCATGTTAAGGAAAAATGGGCCAAGAATCTCTATATTGCGTCTATTAGTTATGGGAGAACAGTTTCATAA 1797 0.4357 MDEYDSGGGSADKAPEAEEEGSTPPLPEKVQVGGSPLYRLDRKLGKGGFGQVFVGRRLGAGSGAVEVALKFEHRSSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDILGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHCKGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAFTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCFCPAPFRQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLVCQVGQKRGRLTMEEDDNEQPKKRVRMGTPATQWISVYNARRPMKQRYHYNVADERLSQHIEKGNEDGLFISSVASCASLWALIMDAGTGFTAQVYELSSNFLHKEWIMEQWDKSYYISAIAGACNGSSLVVMSKGTQYMQQSYKVSDSFPFKWINKKWKEGFFVTAMATAGTRWAIVMSRGVGFSDQVVELDFLYPSEGIHRRWENNYRITATAATPDQAAFILSVPRRKPPDETQETLRTSDFPSTHVKEKWAKNLYIASISYGRTVS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04262 598 FunFam casein kinase 1-like protein HD16 11 354 - -
Vifa2g04262 598 ProSiteProfiles Protein kinase domain profile. 38 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04262 598 SMART serkin_6 38 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04262 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Vifa2g04262 598 SUPERFAMILY Protein kinase-like (PK-like) 38 313 IPR011009 -
Vifa2g04262 598 CDD STKc_CK1 38 307 - -
Vifa2g04262 598 ProSitePatterns Protein kinases ATP-binding region signature. 44 70 IPR017441 GO:0005524
Vifa2g04262 598 MobiDBLite consensus disorder prediction 1 33 - -
Vifa2g04262 598 PANTHER CASEIN KINASE-RELATED 38 566 - -
Vifa2g04262 598 Pfam Protein kinase domain 38 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04262 598 MobiDBLite consensus disorder prediction 1 23 - -
Vifa2g04262 598 Gene3D Transferase(Phosphotransferase) domain 1 10 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04262 Vifa-Chr2 1251879970 1251884511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04262 52 307 MAP Kinase Kinase Kinase AT5G50180 24.101 1.74e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vifa2g04262 Pkinase 1.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04262 - - gmx:100800125 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04262 2 1251879970 1251884511 Vifa2g04262 2 1251879970 1251884511 ECH