Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04249 ATGAATACTTCCTCAAACACTATCTGCAAGTGGCAGGGGATAACCTGCGACAACTGGTCGCACGTTAACACCGTGTCGCTCTCAGGTAAAAACATCTCCGGCGAGGTTTCCTCGTCCATGTTCCAGTTTGCACACGTTACAAACCTCGACCTCTCCAACAATCAGCTTGTTGGAGAAGTCGTCTTCAATGCTCCCTTCCTCTCTTCACTTCTTTATCTCAACCTCAGCAACAACAACTTCACTGGCCCTTTACCTCAATCTTTATTTTCGTCACCGTTTATCAACCTCGAAACTCTTGACCTCTCAAACAACATGTTTTCAGGCAAAATACCAGACCAAATTGGATTACTTTCAAGCTTAACATATCTTGACCTAGGTGGCAATGTTTTGGTTGGAAAAATTCCAAATTCCATCACCAACATGACAAGTTTAGAGTCCTTAATTTTGGCTTCGAACCAATTAGTTGGTGAGATTCCAACCGAGGTAAGCCTAATGAAGAGATTAAAACTGATTTACTTGGGATACAACAATCTTTCAGGTGAGATTCCAAATAACATTGGAAACTTACTTTCCTTGAATCAACTTGATCTTGTTTACAACAATCTCTCGGGACCAATTCCTGAATCAATTGGAAACCTCACCAACCTTCAATATCTCTTTCTCTACCTAAACAAACTCACTGGCCCAATTCCCGAATCCATATTCGAATTGAAGAATCTTGTTTCACTTGATCTAAGTGATAATTATCTTTCCGGAGAGATTTCAAACCTTGTTGTCAACCTTCAGAAACTAGAGATTCTTCATCTTTTCTCAAACAACTTCACAGGCCAAATTCCAAACACCATAACATCTTTACCTCACCTTCAAGTTCTTCAACTCTGGTCAAACAAACTAACCGGCGAAATCCCACAAACACTTGGAATGCACAACAACCTCACAATTCTCGACCTCTCTTCAAACAACCTCACAGGCAAAATCCCAAACAGTTTATGTGCATCTCAAAATCTTCAAAAATTAATCCTCTTTTCAAACTCTCTCAGAGGTGAAATCCCAAAAGGTTTAACCTCATGCAAAACCTTGCTAAGAGTTAGACTCCAAAACAACGAATTGTCAGGGAAATTACCAACGGAAATCACCCAATTGCCTCAGATATACTTGCTCGATATCTCCGGAAACAAACTCTCCGGAAGAATCAATGACATAAAGTGGAAAATGCCATCACTTCAAATGCTCAATTTGGCTAACAACAATTTCACCGGAGAATTACCAAACTCTTTCGGAAGCAACAAACTCGAAGGATTAGATTTTTCACATAATCACTTTTCCGGTTTCATTCAAATCCGTTTCAGAAAATTACTAGAGCTTGTTCAATTGAAACTCAACAATAACAACCTCTCTGGAAAATTCCCCGAAGAAATCTTCAAATGCAAGAATCTTGTTTCCTTAGATTTAAGTCATAATCAGTTAAGCGGCGAGATTCCAGCGAAACTCGCCGAGATGCCGGTTCTTGGTTTACTTGACTTATCGGAGAATCAATTTTCCGGCGAAATTCCGAAGAGTTTAGGAAGCGTTGAATCGCTTGTTGATGTTAACATTTCGTATAATAACTTTCATGGAAGTTTACCTTCCACTGAAGCTTTCTTCGCAATCAACGCGAGTTCAGTCGCCGGTAACAAACTCTGTGGCGGTGACGATGATGGTGACAGTGACGGTTCTAACGGTTTGCCACCGTGCAAAAGTGATAATCAGATGAACTCAGCCACGGTGTTAGTTTTAGTTTGTTTTGTGTTAACGGTTTTCGTTACGTTAAGTGGTGCTGTGCTTTTCGTGCGGAGAAGGACGAAGAGTTTTGAAGTACGAAAAGTGGTTGAAAATGAAGATGGTTCTTGGGAAGTGATTTTCTTTGATCACAAGGCTTCGAAATCGATTAAAATTGAAGATGTTTTGTCTTCGGTTAAAGAAGGAAAAGTGATTACGAAAGGACGAAACTGGGTTTCGTACGAAGGGAAGTGTATATCCAATGATATGCAATTCGTGGTGAAAGAAATAAACGACACGAATTCTGTTTCGGTTAGTTTCTGGGACGAAACGGTGACGTTTGGGAAAAAGGTTAAACATGCAAATATAGTTAAGCTTATTGGAATGTTTAGGTGTGGTAAAAAAGTTTATTTGGTTAATGAATTTGAAGATGGGAAGAGTTTAAGTGAAATCATGCATAATTTGAGTTGGCAAAGGCGAATTAAAATCGCTTTAGTTAATCGAAAAGATGTTCCTCGCCTTCAACTCAACCTTCCTGGAATCGGAATATCCTTTATTGGCATTAAAGGTTTCGGCTCATCATCTTACATTGCTCCAGAAAAAAGGAAGGGAAAAGAAGTGACCGAGAAGAGTGAGATATATAGTTTTGGAATTATGTTGATTGAGTTATTAACGGGAAGAACACCTGAGGACATAGAAGCAGTTCAAAAAAAGAACAATATTGTTGAGTGGGCCCGTTATTGTTACACTGACTGTCATCTTGACACATGGATTGATCCAGTTATAATGAAGGGTGAAAATTTATCGGCATATCAAAACGATATTGTAGACACTATGAATCTTGCACTGCATTGTACCGCAGGTGATCCCACCACGAGGCCATGCGCAAGAGACGTGGTTAAAGTATTAGAAACCGTTCAATGTAACAGAATCACTTTTTGCTGA 2703 0.3947 MNTSSNTICKWQGITCDNWSHVNTVSLSGKNISGEVSSSMFQFAHVTNLDLSNNQLVGEVVFNAPFLSSLLYLNLSNNNFTGPLPQSLFSSPFINLETLDLSNNMFSGKIPDQIGLLSSLTYLDLGGNVLVGKIPNSITNMTSLESLILASNQLVGEIPTEVSLMKRLKLIYLGYNNLSGEIPNNIGNLLSLNQLDLVYNNLSGPIPESIGNLTNLQYLFLYLNKLTGPIPESIFELKNLVSLDLSDNYLSGEISNLVVNLQKLEILHLFSNNFTGQIPNTITSLPHLQVLQLWSNKLTGEIPQTLGMHNNLTILDLSSNNLTGKIPNSLCASQNLQKLILFSNSLRGEIPKGLTSCKTLLRVRLQNNELSGKLPTEITQLPQIYLLDISGNKLSGRINDIKWKMPSLQMLNLANNNFTGELPNSFGSNKLEGLDFSHNHFSGFIQIRFRKLLELVQLKLNNNNLSGKFPEEIFKCKNLVSLDLSHNQLSGEIPAKLAEMPVLGLLDLSENQFSGEIPKSLGSVESLVDVNISYNNFHGSLPSTEAFFAINASSVAGNKLCGGDDDGDSDGSNGLPPCKSDNQMNSATVLVLVCFVLTVFVTLSGAVLFVRRRTKSFEVRKVVENEDGSWEVIFFDHKASKSIKIEDVLSSVKEGKVITKGRNWVSYEGKCISNDMQFVVKEINDTNSVSVSFWDETVTFGKKVKHANIVKLIGMFRCGKKVYLVNEFEDGKSLSEIMHNLSWQRRIKIALVNRKDVPRLQLNLPGIGISFIGIKGFGSSSYIAPEKRKGKEVTEKSEIYSFGIMLIELLTGRTPEDIEAVQKKNNIVEWARYCYTDCHLDTWIDPVIMKGENLSAYQNDIVDTMNLALHCTAGDPTTRPCARDVVKVLETVQCNRITFC 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04249 900 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515
Vifa2g04249 900 Gene3D Transferase(Phosphotransferase) domain 1 637 752 - -
Vifa2g04249 900 SUPERFAMILY L domain-like 404 562 - -
Vifa2g04249 900 Pfam Leucine Rich Repeat 407 427 IPR001611 GO:0005515
Vifa2g04249 900 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
Vifa2g04249 900 Gene3D Ribonuclease Inhibitor 92 161 IPR032675 -
Vifa2g04249 900 SMART LRR_typ_2 93 117 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 141 164 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 311 333 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 165 189 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 452 476 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 500 524 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 405 428 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 67 91 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 213 237 IPR003591 -
Vifa2g04249 900 SMART LRR_typ_2 285 309 IPR003591 -
Vifa2g04249 900 SUPERFAMILY L domain-like 5 106 - -
Vifa2g04249 900 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 267 570 - -
Vifa2g04249 900 FunFam Leucine-rich receptor-like protein kinase family protein 160 256 - -
Vifa2g04249 900 Gene3D Transferase(Phosphotransferase) domain 1 770 898 - -
Vifa2g04249 900 ProSiteProfiles Leucine-rich repeat profile. 239 261 IPR001611 GO:0005515
Vifa2g04249 900 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 3 159 - -
Vifa2g04249 900 Pfam Leucine rich repeat 286 346 IPR001611 GO:0005515
Vifa2g04249 900 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vifa2g04249 900 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515
Vifa2g04249 900 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 616 728 - -
Vifa2g04249 900 Pfam Leucine Rich repeat 475 492 IPR001611 GO:0005515
Vifa2g04249 900 Pfam Protein tyrosine and serine/threonine kinase 780 888 IPR001245 GO:0004672|GO:0006468
Vifa2g04249 900 Pfam Protein tyrosine and serine/threonine kinase 656 741 IPR001245 GO:0004672|GO:0006468
Vifa2g04249 900 Gene3D Ribonuclease Inhibitor 260 566 IPR032675 -
Vifa2g04249 900 ProSiteProfiles Leucine-rich repeat profile. 311 333 IPR001611 GO:0005515
Vifa2g04249 900 SUPERFAMILY Protein kinase-like (PK-like) 630 894 IPR011009 -
Vifa2g04249 900 SUPERFAMILY RNI-like 73 432 - -
Vifa2g04249 900 Gene3D Ribonuclease Inhibitor 162 258 IPR032675 -
Vifa2g04249 900 ProSiteProfiles Protein kinase domain profile. 652 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04249 900 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 168 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04249 Vifa-Chr2 1247705322 1247708366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04249 3 890 Receptor kinase-like Gene Family AT2G25790 47.793 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Vifa2g04249 PK_Tyr_Ser-Thr 7.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04249 - - gmx:100777118 1169.45