Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04248 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTGCCATCATTGTGGCATTGGCAACAGCAGCAAAATTTATAATGCTGAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAGTCCAGAAGTCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1035 0.3845 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIRIVAIIVALATAAKFIMLNIFVAGTDTSTYTLEWAMAELMHSPEVMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04248 344 FunFam Geraniol 8-hydroxylase 131 337 - -
Vifa2g04248 344 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa2g04248 344 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 277 286 IPR017972 GO:0005506|GO:0016705
Vifa2g04248 344 PRINTS P450 superfamily signature 275 284 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS P450 superfamily signature 145 162 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS P450 superfamily signature 198 209 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS P450 superfamily signature 284 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 SUPERFAMILY Cytochrome P450 136 337 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 Pfam Cytochrome P450 139 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 135 340 - -
Vifa2g04248 344 Gene3D Cytochrome P450 132 343 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa2g04248 344 Pfam Protein of unknown function (DUF3675) 67 130 IPR022143 -
Vifa2g04248 344 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa2g04248 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vifa2g04248 344 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa2g04248 344 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS E-class P450 group I signature 284 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS E-class P450 group I signature 274 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS E-class P450 group I signature 154 180 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS E-class P450 group I signature 134 151 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 PRINTS E-class P450 group I signature 238 262 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04248 344 SUPERFAMILY RING/U-box 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04248 Vifa-Chr2 1247154232 1247156215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04248 138 340 Cytochrome P450 AT2G45550 56.158 5.73e-85 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04248 - - cave:132173603 299.286