Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04246 ATGATGGCGGTGAGTAATTCATCTTGTAAAGATGGAAGCAAAATATCAATGGACAACGGTAAATATGTAAGGTATACACCGGAGCAAGTCGAAGCGCTTGAACGACTCTACCATGAATGTCCCAAACCTACTTCTCTTCGCCGTCAACAGCTTATTAGAGAGTGTCCTATTCTTTCTCACATTGAACCGAAACAGATCAAAGTTTGGTTCCAGAATCGAAGGTGTAGAGAGAAGCAGAGGAAAGAAGCTGGACGGTTGCAAGCGGTGAATAGAAAGTTGACAGCGATGAATAAGTTGCTTATGGAGGAGAATGATCGGTTGCAGAAACAAGTTTCTCATCTTGTGTATGAGAATAGTATTTTCCGCCAACATACACCAAATGGAGCCATTGCTACGACAGATACAAGTTGTGAGTCAGTGGTAACAAGTGGTCAGCAGCATCCACCAAGGGATGCTAGCCCTGCTGGACTTTTGTCCATAGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCCGGTATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTCTTGAACCTGCCAGGGTTGCTGAAATCCTCAAAGATAGGCTCGCGTGGTATCGTGATTGCCGAACTGTGGACGTTCTCAATGTTATGTCCACGGGAAGTGGAGGAACCGTTGAATTGCTCTATATGCAGTTGTATGCGCCAACAACTTTAGCACCAGGGCGTGACTTCTGGTTGTTGCGCTACACATCACTTTTGGAGGATGGAAGTCTCGTGGTGTGTGAGAGATCACTTAACAACATTCAGAATGGTCCTAGTATGCCTCCAGTGCCGCATTTTGTCAGAGCTGATGTATTGCCAAGCGGGTATCTGATTAGGCCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGCTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTATATGAATCATCCATGCTGCTTGCTCAGAGAACAACTATGGCAGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAACCAAGTGTGACAGGATGGGGAAGAAGGCCTGCAGCTCTACGTTCGCTTAGTCAGAGATTGAGCAAGGGATTCAATGAAGCTGTGAATGGATTTACAGATGATGGATGGTCCATGTTAGAGAGTGATGGCATTGATGATGTTACCCTACTTGTAAATTCATCACCTAGCAAGATGATGGGAATAAATATTGGTTATAATAACAGTGGATTTCCATCTGTCACCAGTTCTGTACTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCTCCGGCTATTCTTCTTAGGTTCTTGCGGGAACACCGATCAGAATGGGCAGATACAAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCTTGTAGCTTGCCGGGGACCAGACCAGGAAGTTTTGGTGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGATATGACAATGCCCGGTGATATTTTTCTTTTGCAACTTTGCAGTGGAGTGGATGAGCATGCAGTTGGCACAAGTGCAGAGCTTATTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGCCACGGATGCTGCTAGTCCGAACCGTACACTCGATCTTGCTTCTGCACTTGAGGTTGGAACCACAGGAAACAAAGCAGGTGGTGACAATTCAGGTCATTCTGGGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGACGTCCAGCTTCAAGATAATATAGCAGCTATGGCACGACAGTATGTGCGCAGCATAGTTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCTCCTAATGCATTTCACTCACCGCCCGGAACTCCTGAGGCTCAAACACTTACTCGATGGATCTGTAACAGCTATAGATACTATCTAGGCGTAGAACTACTAAAGTGCGAAGGCAGTGAATCGATACTCAAATCCCTTTGGCATCATTCAGATGCAGTTCTATGCTGCTCTCTAAAGGCATTACCTGTTTTTACGTTTGCGAACCAAGCAGGACTTGACATGCTTGAAACTACCTTGGTTGCACTTCAAGACATCACACTGGAAAAGATCTTCGATGACAATGGAAAGAAAACACTATGCACTGAATTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATTTGTTTATCTAGCATGGGGAGGCCAATAACATATGAGAGAGCAGTAGCATGGAAAGTATTAAACGAAGAAGAATCAGCTCATTGCATATGTTTTATGTTTATCAATTGGTCATTTGTCTGA 2511 0.448 MMAVSNSSCKDGSKISMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENSIFRQHTPNGAIATTDTSCESVVTSGQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLAWYRDCRTVDVLNVMSTGSGGTVELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNIQNGPSMPPVPHFVRADVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRSLSQRLSKGFNEAVNGFTDDGWSMLESDGIDDVTLLVNSSPSKMMGINIGYNNSGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGTRPGSFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSATDAASPNRTLDLASALEVGTTGNKAGGDNSGHSGSTKSVMTIAFQFAFDVQLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSPNAFHSPPGTPEAQTLTRWICNSYRYYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCICFMFINWSFV 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04246 836 Pfam START domain 160 368 IPR002913 GO:0008289
Vifa2g04246 836 SUPERFAMILY Bet v1-like 159 370 - -
Vifa2g04246 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 836 IPR044830 GO:0003700
Vifa2g04246 836 ProSiteProfiles 'Homeobox' domain profile. 16 80 IPR001356 GO:0003677
Vifa2g04246 836 Coils Coil 86 110 - -
Vifa2g04246 836 ProSiteProfiles START domain profile. 150 378 IPR002913 GO:0008289
Vifa2g04246 836 Gene3D - 12 86 - -
Vifa2g04246 836 CDD START_ArGLABRA2_like 154 369 - -
Vifa2g04246 836 CDD homeodomain 21 81 IPR001356 GO:0003677
Vifa2g04246 836 CDD bZIP 73 112 - -
Vifa2g04246 836 FunFam Homeobox-leucine zipper protein REVOLUTA 21 76 - -
Vifa2g04246 836 SMART HOX_1 18 84 IPR001356 GO:0003677
Vifa2g04246 836 SUPERFAMILY Homeodomain-like 20 83 IPR009057 -
Vifa2g04246 836 Gene3D - 193 375 IPR023393 -
Vifa2g04246 836 Pfam MEKHLA domain 695 835 IPR013978 -
Vifa2g04246 836 SMART START_1 159 369 IPR002913 GO:0008289
Vifa2g04246 836 Pfam Homeodomain 21 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04246 Vifa-Chr2 1246890278 1246895573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04246 16 836 Homeobox Transcription Factor Family AT4G32880 79.493 0.0 1372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa2g04246 START 1.1e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04246 K09338 - gmx:100815727 1576.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04246 2 1246890278 1246895573 Vifa2g04246 2 1246890278 1246895573 ECH