Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04244 ATGGAAGCTCAAGAGTTTTTCCAAACCAGCTTTTTGCCGCAGTTTCCTTCTTCCCCGTCCGACAATAATTTGGCCACAACGAATGTAAACGGTGGTGGTGGTGGTGGTGGTTCTGACCACTTCATTGTTGAAGATCTGTTTGATTTCTCGAATGAAGATGATGCTGCCATTGGTGACCCTGCTTTTGATTCTCCTCCTGCCATCTCTGATAATTCTCCACCTCTTGAAACTAATGAAAATTCCAATTTCTTCATGGAGAATTCTTGCCAGAATTCTGTTGATGAGCCTTTCTCCGGCGAACTCTCCGTTCCGTATGATGATCTTGCGGAGCTAGAATGGTTATCCAAATTTGATGAAGAATCATTTTCAAGTGAGGACCTACAGAAACTAGAATTGATATCTGGCTTGAAGGCATCAAACGACGCCGCATCAAAAACGAACGAAGAATCAAACCCACTACACCCTCCTCAAGTGTCCGTCCCCGCTAAAGCTCGCAGTAAACTACCTCGTGGACCTCCATGCAACTGGACTTCGCGTCTTCTAGTTCTCTCTCCACCCACCATCACCACCACCACCACCGCATCTTCTCACTCAGACATTATAGCTCCACCAAAGAAACCTTCGCCGAGAAAGAGAGACCATGGCAATGATGAAGGTCGCAAGTGTCTTCATTGCGCCACCGATAAAACACCTCAGTGGCGCACTGGACCATTAGGTCCAAAAACACTCTGCAATGCATGCGGAGTCAGATACAAGTCAGGTCGACTCGTACCTGAATACAGGCCGGCAGCAAGCCCAACATTCGTGTTGACGAAACACTCCAACTCGCACCGGAAGGTGCAAGAGCTCCGGCGCCAGAAGGAGATGATGAAGGTCCATCAACACCAAATGTTGCAACTACAAGTGCAACATCATCACAACATTATGTTCGATGGACCATCCAACGGTGATGATTACTTGATCCATCAACACGTGGGACCCGATTTCACACACCTCATGTAG 1002 0.475 MEAQEFFQTSFLPQFPSSPSDNNLATTNVNGGGGGGGSDHFIVEDLFDFSNEDDAAIGDPAFDSPPAISDNSPPLETNENSNFFMENSCQNSVDEPFSGELSVPYDDLAELEWLSKFDEESFSSEDLQKLELISGLKASNDAASKTNEESNPLHPPQVSVPAKARSKLPRGPPCNWTSRLLVLSPPTITTTTTASSHSDIIAPPKKPSPRKRDHGNDEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMKVHQHQMLQLQVQHHHNIMFDGPSNGDDYLIHQHVGPDFTHLM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04244 333 FunFam GATA transcription factor 210 298 - -
Vifa2g04244 333 Gene3D - 215 266 IPR013088 GO:0006355|GO:0008270
Vifa2g04244 333 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Vifa2g04244 333 SMART GATA_3 216 266 IPR000679 GO:0006355|GO:0043565
Vifa2g04244 333 MobiDBLite consensus disorder prediction 8 33 - -
Vifa2g04244 333 CDD ZnF_GATA 221 268 IPR000679 GO:0006355|GO:0043565
Vifa2g04244 333 MobiDBLite consensus disorder prediction 141 172 - -
Vifa2g04244 333 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Vifa2g04244 333 MobiDBLite consensus disorder prediction 204 218 - -
Vifa2g04244 333 MobiDBLite consensus disorder prediction 8 37 - -
Vifa2g04244 333 MobiDBLite consensus disorder prediction 189 218 - -
Vifa2g04244 333 PANTHER GATA TRANSCRIPTION FACTOR 25 293 - -
Vifa2g04244 333 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Vifa2g04244 333 PIRSF Txn_fac_GATA_plant 24 311 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vifa2g04244 333 MobiDBLite consensus disorder prediction 53 80 - -
Vifa2g04244 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04244 Vifa-Chr2 1245710758 1245715080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04244 41 333 C2C2-Gata Transcription Factor Family AT5G25830 49.394 1.40e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa2g04244 GATA 1.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04244 - - mtr:11432019 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04244 2 1245710758 1245715080 Vifa2g04244 2 1245710758 1245715080 ECH