Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04230 ATGAGTACTACTATTCAACAAACTCATAACTCAGAAACCAAAACCATCTCAAACGGTTCACCACCACAATCATCATCACAATCACAATCACAATCCCAAAAAATCAAACGCATTAGAGACACAAGCAAGCATCCACTCTACCGCGGCGTGCGTATGCGGAACTGGGGTAAATGGGTGTCCGAAATCCGCGAGCCCAAGAAGAAATCCCGAATATGGCTCGGCACATTCCCAACTCCAGAAATGGCAGCTAGAGCTCACGACGTCGCTGCTCTCAGCATCAAAGGAAATGCTGCCATTCTCAATTTCCCCGAGTTAGCAAACTCACTCCCCAGGCCAGCTTCTGTCTCTCCCCGCGACGTTCAAGCCGCTGCTACCAAAGCCGCTCACATGGAGTTTCCTTCTTCGGCAACGCCTTACGAATTGAGTGAGATAATCGAACTTCCTACTCTCGGAAACAGCAGTGATTTCGAGAAAGAGTTTGTGTTAATTGATTCTATCGATGCGTCCTGGATGTTTCAGCCTCCTTGCTTGCATACCATGGAAGATTTTCTTTGGAGTGAAGTTTACAGTAACTATGGCTAG 582 0.4725 MSTTIQQTHNSETKTISNGSPPQSSSQSQSQSQKIKRIRDTSKHPLYRGVRMRNWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALSIKGNAAILNFPELANSLPRPASVSPRDVQAAATKAAHMEFPSSATPYELSEIIELPTLGNSSDFEKEFVLIDSIDASWMFQPPCLHTMEDFLWSEVYSNYG 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04230 193 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vifa2g04230 193 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Vifa2g04230 193 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Vifa2g04230 193 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Vifa2g04230 193 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Vifa2g04230 193 MobiDBLite consensus disorder prediction 1 43 - -
Vifa2g04230 193 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Vifa2g04230 193 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Vifa2g04230 193 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Vifa2g04230 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 150 - -
Vifa2g04230 193 MobiDBLite consensus disorder prediction 1 35 - -
Vifa2g04230 193 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04230 Vifa-Chr2 1241280578 1241281159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04230 10 193 AP2-EREBP Transcription Factor Family AT5G11590 52.074 5.61e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g04230 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04230 K09286 - jre:109009494 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04230 2 1241280578 1241281159 Vifa2g04230 2 1241280578 1241281159 ECH