Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04222 ATGCCAGAGATGCAACAAGGTGTAACTCCTAGTAAAGGTGTTGTTATAATTGTTCTTTCCATTATGTTTCTCATAACTTTTATCTTACTTGTTTATGTCAAATTCTGTCGTGTTACTCCTCATCATCTTATAACCCCAAACCCTCTTAACCAAGGAACAACTCCATCAAGGTCTATAGTTTTGGGCGTTGAAAAGAAAGTGATTGAAACACTTCCTTTCTTTAAATTTTCTTCCTTAAAGGGATCCAAACAAGGACTAGAATGCACTGTTTGTTTGTCGAAATTCGAAGACGAAGAGACACTTAGATTGTTGCCCAAATGCAAGCATGCTTTTCATATGAATTGTATTGATAAGTGGCTTGAGAGTCACTCTACCTGTCCTCTTTGTAGGTACATGGTTGAAGAAAATGATATAAGAAACTTCACTTTTTCATTCAGTTCAAGATTCTTAAGAGTCCCTTCAAATCTAAGTGAAGATCCAAATCTTGAGATTTTTATTCAAAGAGAACCTTCTCAAAGAAAGAGTAAAATAGATGAACAAGAACAAGAACAAGAAATAGTTCTTCTTGATCTTGAAGAAGGTGGTAGCAGCAATGCTACAAAATGGAAACAACAACAAAAACAACATTTGCATATGATAAATCATAGAATATTGATCTCTGATGCTGTTGCTACAAGGAGTAGATGGAGTGATCTTAACTCTTCTGATTTGTTATCATTGAAAAGTGAGATGCTTCATGATGTGTCAAGTGCAAGATTTTCTCCTGATGAGGATGAAAATTCTTTTACAGCATTGAATCCTGGCGAGAAGAGGTGTATGTCTGAGATTGCAAATGTTCCAAGGTTTGTGGAAATTGGCAGCAGAAGAAGGAATGGAAATGATGAGGCAATGTGGAGGATTTGGTTGCCTATTGCAAGGAGAACAGTTCAATGGTTTGTAAGACAAGAAACAAACTCGGTTCAGTTATTACAACATAAACATTTAGCTTCAAATGTTTGA 999 0.3564 MPEMQQGVTPSKGVVIIVLSIMFLITFILLVYVKFCRVTPHHLITPNPLNQGTTPSRSIVLGVEKKVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEETLRLLPKCKHAFHMNCIDKWLESHSTCPLCRYMVEENDIRNFTFSFSSRFLRVPSNLSEDPNLEIFIQREPSQRKSKIDEQEQEQEIVLLDLEEGGSSNATKWKQQQKQHLHMINHRILISDAVATRSRWSDLNSSDLLSLKSEMLHDVSSARFSPDEDENSFTALNPGEKRCMSEIANVPRFVEIGSRRRNGNDEAMWRIWLPIARRTVQWFVRQETNSVQLLQHKHLASNV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04222 332 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Vifa2g04222 332 Pfam Ring finger domain 87 130 IPR001841 -
Vifa2g04222 332 SMART ring_2 88 129 IPR001841 -
Vifa2g04222 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 139 IPR013083 -
Vifa2g04222 332 SUPERFAMILY RING/U-box 69 135 - -
Vifa2g04222 332 CDD RING-H2_EL5-like 87 130 - -
Vifa2g04222 332 FunFam RING-H2 finger protein ATL43 63 137 - -
Vifa2g04222 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04222 Vifa-Chr2 1237675446 1237676444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04222 10 316 C3H Transcription Factor Family AT2G20030 42.197 1.43e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04222 K10664 - gmx:100816668 366.696