Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04213 ATGGAGTGGGTTGTCGGCGGCAAGTTTAAGATCGGTCGCAAAATCGGAAGTGGTTCGTTTGGTGAAATTTTTATCGCTTCGGATATGGATAACTCTGAGATCGTAGCTGTTAAACTGGAAAAGAAGAATACAAGGCATCCACAACTATTGCAAGAGGCCAAATTATACAGTATTCTTCAAGGAGAAAGTGGTATTCCAAATATGAAATGGTGTGGCACTGATGGAGACCATAATGTTCTGGTTATGGATCTTCTCGGGCGTAGTCTGGAAGACCTTTTTGTATTCTGTGGGAACAAACTTTCTTTAAAAGCAGTTTTGATGTTAGCCGATCAGATGCTTTCGAGAATAGAATATGTGCATTCCAAGGGATTCTTACATAGAGACATCAAACCGGATAACTTCCTAATGGGTATTAGGAGAAAATCAAATCAGGTTTATATTATTGATTTCGGACTAGCAAAAAGATATCAGGACCCCAAAACAAAGAAGCATATTGCTTACAGAGAGAAGAAAAATTTAACAGGGACTGCACGATATGCAAGTTGCAATACTCACTTAGGAATTGAGCAAAGTCGCCGGTGA 582 0.3952 MEWVVGGKFKIGRKIGSGSFGEIFIASDMDNSEIVAVKLEKKNTRHPQLLQEAKLYSILQGESGIPNMKWCGTDGDHNVLVMDLLGRSLEDLFVFCGNKLSLKAVLMLADQMLSRIEYVHSKGFLHRDIKPDNFLMGIRRKSNQVYIIDFGLAKRYQDPKTKKHIAYREKKNLTGTARYASCNTHLGIEQSRR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04213 193 SMART serkin_6 9 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04213 193 SUPERFAMILY Protein kinase-like (PK-like) 5 193 IPR011009 -
Vifa2g04213 193 Pfam Protein kinase domain 10 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04213 193 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa2g04213 193 Gene3D Transferase(Phosphotransferase) domain 1 1 193 - -
Vifa2g04213 193 CDD STKc_CK1 8 193 - -
Vifa2g04213 193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa2g04213 193 PANTHER CASEIN KINASE-RELATED 9 193 - -
Vifa2g04213 193 ProSiteProfiles Protein kinase domain profile. 9 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04213 Vifa-Chr2 1237021938 1237024253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04213 5 153 EF-hand Containing Proteins AT1G74740 28.387 1.06e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa2g04213 Pkinase 3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04213 K08960 - gmx:100810377 336.65