Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04211 ATGGGAAGTGAGAGGTCGATTTCTGGTCCATCTGATACTGTACAGAAAATTAAACCATTGCATGGGAGGACTACTGGCCCTACAAGGCGATCCACTAAAGGAAATTGGACAGCTGAGGAGGATGAAATTTTGCGGAAGGCTGTTGAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGGACTGATGTACAATGCCTGCATAGGTGGCAAAAAGTCTTGAATCCAGAACTTATCAAAGGTCCTTGGTCTAAAGAGGAAGATGAAACAATTGTTGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATAGCACAACATTTACCTGGACGTATTGGTAAACAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAATAAGGAAGCATGGACGCAGGAAGAAGAGTTGGCTCTAATACAGGCTCATCAGATTTATGGGAATAGATGGGCAGAATTATCAAAGTTTTTGCCTGGAAGGACAGACAATGCGATAAAGAACCACTGGAATAGTTCTGTCAAAAAGAAATTAGATTCTTACTTAGCGTCGGGCTTGCTTGCTCAGTTTCAAAATGTACAACTTGTTGGAAATCCAAATCAACCTATTGATTCATCCTGTGCAAGGTTTCAGTTTAGGCTAGATGATAACGGTCCTAGAGGGACTGAAGGTGAGGAAGTTTCACAGTGTAGCCAGGAATCGGCTAATACTGATAACTTTCCGTCTGGCAGAGAGTTGAGAATTGTTATGCAAAATGGAGTAGAGTACATGGCAAATGAAGAATCTAATCAAGCATCATGTTCAGAGCCATATTACTTGTCTCTGGACGACGTTACTTGCCAAGAATCATTTGAACAGAAATATTCAAACCGACCCGGAAGTTCCTCCGCCAACGTGGATTACCCATTTAATTTACATGCTTTGCCCAACATTTCCTCGCTTGACTTTGGGCCGGAATCATCAGAGTTGCAAAATGATTCTTTAGCTCCTAGTGAAAGTCATAACATGATGATTGTTCCATATGAATACCAGCCTTCATCTATGAACAATGTCGAAGGAGAACAAAACATGTTGGTAACTGATGATGAATGTAGGTTCCTATTTTCAGAGGCAATGAGTGATGAATGCTTTTCTTCAGGAGGAGTAAATAATATTGACATGTCTAGATGCACTTCATCTCTTTGTCAGTCTTCTTTACCATCTTGTGGTAGGATGGTGATGTATGCTGCTGAAGCCAATCCGTTGGTAGGCTCTGAGGATCAACATTGTGTCTCGACAGAACACGATGGCTTGATTTATGCCAATGATAAATATAGGTTTGAAGATGTTGGGAAAGATGAAAATTTAGAATTGGTCCCTGTAAATAGTTCTGGCTGTGGATCAGATACTATGCAAACTTGCTATCCAGTTGATGAAAAACCAAAGGTACATATAAAACAGGAGGAAGTAGGAGAAAAACTGTGTTATGAACCACCTCGTTTTCCAAGCTTGGATATACCTTTCATGAGCTGTGATCTTATACAGACTGGCGATATGCAGCAGGAATTCAGTCCCTTAGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTTACTCCTTTCAGATTGTGGGACTCACCTTCTCGCATAGATAGTCCAAAGGCTTTGTTAAAAAGTGCTGCTAAAACTTTCATTAGTACACCATCCATAATGAAAAAGAAGAAACGAAACCGAGACCTTTTATCTCCACTATCAGATAGAAGAATGGAGAAGAAACATGAGATTGACATGACATCAACTTTGATTACAAATTTTTCTCGTTTGGATGTCATGTTTGATGATAATGAGGCTCAAAGTATTGAAGATGATAAAGAAAATTGTAAACCAGCTTTTAAGGTAGAGGAGAAAAGTAACACTCAGAAGAAGATTGACCAGTCTCCTCTCGATGCCGATTCTAAGATGAAGAATGATATTGATCCTGTTGCTGAAATTGTGGAACAGCCTTCTGGAGTTTTGGTTGAACATGATATGAATGATCCATTGTTGTATTCTCCTAGTCGAATTGGTTTGAAATCAGACATAGTTCTTAGTTTAAGTGCTAGAAGTCATAAAAAGCCAGCTTCAAGACTTAGCTCTCCTTGTGTTCGATTAAAGGAGCATGAAAGACTCTCAGTTTCTGTTACTTGCGTACAATCCGTCTGTTCATCATCAGGCCCAGGAGACAATATGGGCAACCAAACCGGAAACGATGGTGGTTTTGAAAGAAACAACATTTTTGGCGGAACACCATATAGGAAAAGCTTTGAATCACCTTCGGCATGGAAATCCCCTCTGTTCTTCAGCACTTTTTTGTCTAGCCCCAGGCTTGATACTGAAATTACAATTGAGGATTATGGATGTTTCTTTAGCCCGGGCGATAAAAGCTATGATGCAATGGGATGGATGAAACAGATTGGTGAACACACTGCTGCTCAATATGCCGATGCTCTAGAGGTTTTGGAAAATGAACCTCCTAAGACACTACCAAAAGATGCCTCTGGAGACAATCAAGAAAATATCGATCCTCATGATCAGCCTGGGAACCATTCTAACTCAGCTTCAAATGCTTTGGTGGAGCGACGCATGCTTGACTTCAGCGAATGTGGATCTCCAAAGAAGGGAGATAATGGCAAATCCTCAGTTATGAGTATTTCAAGTCCTTCTTCGTATTTGTTGAATGGCTGTAGATAA 2736 0.401 MGSERSISGPSDTVQKIKPLHGRTTGPTRRSTKGNWTAEEDEILRKAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDETIVDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIQAHQIYGNRWAELSKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQFQNVQLVGNPNQPIDSSCARFQFRLDDNGPRGTEGEEVSQCSQESANTDNFPSGRELRIVMQNGVEYMANEESNQASCSEPYYLSLDDVTCQESFEQKYSNRPGSSSANVDYPFNLHALPNISSLDFGPESSELQNDSLAPSESHNMMIVPYEYQPSSMNNVEGEQNMLVTDDECRFLFSEAMSDECFSSGGVNNIDMSRCTSSLCQSSLPSCGRMVMYAAEANPLVGSEDQHCVSTEHDGLIYANDKYRFEDVGKDENLELVPVNSSGCGSDTMQTCYPVDEKPKVHIKQEEVGEKLCYEPPRFPSLDIPFMSCDLIQTGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRIDSPKALLKSAAKTFISTPSIMKKKKRNRDLLSPLSDRRMEKKHEIDMTSTLITNFSRLDVMFDDNEAQSIEDDKENCKPAFKVEEKSNTQKKIDQSPLDADSKMKNDIDPVAEIVEQPSGVLVEHDMNDPLLYSPSRIGLKSDIVLSLSARSHKKPASRLSSPCVRLKEHERLSVSVTCVQSVCSSSGPGDNMGNQTGNDGGFERNNIFGGTPYRKSFESPSAWKSPLFFSTFLSSPRLDTEITIEDYGCFFSPGDKSYDAMGWMKQIGEHTAAQYADALEVLENEPPKTLPKDASGDNQENIDPHDQPGNHSNSASNALVERRMLDFSECGSPKKGDNGKSSVMSISSPSSYLLNGCR 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04211 911 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Vifa2g04211 911 Gene3D - 138 199 - -
Vifa2g04211 911 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Vifa2g04211 911 Gene3D - 85 136 - -
Vifa2g04211 911 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
Vifa2g04211 911 MobiDBLite consensus disorder prediction 232 246 - -
Vifa2g04211 911 CDD SANT 139 179 IPR001005 -
Vifa2g04211 911 MobiDBLite consensus disorder prediction 226 246 - -
Vifa2g04211 911 MobiDBLite consensus disorder prediction 839 911 - -
Vifa2g04211 911 PANTHER MYB PROTEIN-RELATED 33 106 - -
Vifa2g04211 911 CDD SANT 35 79 IPR001005 -
Vifa2g04211 911 FunFam Transcriptional activator Myb isoform A 85 137 - -
Vifa2g04211 911 CDD SANT 87 131 IPR001005 -
Vifa2g04211 911 SUPERFAMILY Homeodomain-like 82 178 IPR009057 -
Vifa2g04211 911 SUPERFAMILY Homeodomain-like 34 89 IPR009057 -
Vifa2g04211 911 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Vifa2g04211 911 MobiDBLite consensus disorder prediction 891 911 - -
Vifa2g04211 911 Pfam Myb-like DNA-binding domain 85 131 IPR001005 -
Vifa2g04211 911 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Vifa2g04211 911 Pfam Myb-like DNA-binding domain 137 179 IPR001005 -
Vifa2g04211 911 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 135 IPR017930 -
Vifa2g04211 911 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Vifa2g04211 911 MobiDBLite consensus disorder prediction 1 36 - -
Vifa2g04211 911 MobiDBLite consensus disorder prediction 636 656 - -
Vifa2g04211 911 SMART sant 84 133 IPR001005 -
Vifa2g04211 911 SMART sant 32 81 IPR001005 -
Vifa2g04211 911 SMART sant 136 184 IPR001005 -
Vifa2g04211 911 Gene3D - 32 84 - -
Vifa2g04211 911 MobiDBLite consensus disorder prediction 854 872 - -
Vifa2g04211 911 FunFam Transcription factor MYB3R-2 138 200 - -
Vifa2g04211 911 FunFam Transcriptional activator Myb isoform A 32 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04211 Vifa-Chr2 1235799648 1235805729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04211 5 911 MYB Transcription Factor Family AT4G32730 42.371 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g04211 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04211 - K09420 psat:127084879 1687.16