Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04203 ATGGAGAAGAGCGAGACGACGCTGGATTTAGCTGCTCGGAGATTCGTGAGGCACTTGGATTTCACTGCCGTACGTGGAGGTCCGGCGTACTTGACATTGTCGCCACCGATGCCACGGCCGCAAAATATTCTACAGTTGCCGACGCAGTCGTGTTCTCCGGCGCAATTGACATTGGATTTTCAGTCATTAAGTCAACGGCGGTGGATACCTTCACAGCCACGGTGGCAACAGCAGAGGACGTCACAGTCTCCGCCGGTGATGTCATACTTACAATCTCCGCGGCCTCAGTTAGTTTCGCCGGTCCGTCGTTTACAACATCCCTCACAGAAACTTCTGGTGAAAAGAAAGCACGAGTCTTCTAGATCACAGCCTCAACATAATGCAGGATTAAAGGACAATACTCCAAAGAAACAAAAACACTGTAACTGCAAGAATTCTCGATGCCTTAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGTTGCAACTGTCTGAATTGTCATAATAATGTGGACAATGAGGCTGCCCGACAGGAGGCAGTTGGAATAACTCTGGAAAGAAATCTAAATGCTTTCAGACCTAAAATTGCAAGCAGTCCACTAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAACTCAAGTTACAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGTTTTCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGACGAACGAAGAGCAGTTTTCCAAGAAGAGTATAGACTAGTACAAATCAGACAGGCAACTAATGCGGCCATTAGTGGAGCAGTTGGACCCTCCAGCTCTGTAACCCATATAACACCCAAAAAGAGAAAAATCCCAGAAATATTTTCTGGCAAATCATTCATAGATCAAACTTTTGACATGACGACTCAATACCAACAGGGTCACCATTCAAATTCAGCGTGTTTGGATTTGAAAGCATGTGAAACTAATAAGGAATTTGATCCCACAGCTTCATCTCCTTTATCTCCGCTCGCTTCCTTTGTTTCTGACACTGCCAATACAATAATTCCAGGATCTTCAATATCTACATACAGGTCTGTTTTGGCTGATGTCCTCCAGACACAGAATGTGAAGAATCTTTGTTCACTTTTAGTTGTTCTCTCTGGAGAAGCTACAAAGAAAAATGCAGAAATGAGAGGGAAAGAAGTTAGAAAAATAGAGACCAGGAAATCTGAAGCTTCTACTGCTTCATCGGCTCAATCGTTGCAAGACAGTCGAGAAGTTGTCACGCCTGACTGTGAGAATCATGCAAATAAAGATGTACCAGATGCAGTTGATATTGACATTCGAAATATGCCATTGTCACCGGAAACACTTGAATTGATGTGTGATGAACAAGATGTGATGTTTTTCGATAATGTTTCTGCAAATGGAGTTGCAATTGGCAACACTGAACATAACATGAATCAGAAGTCTTCCAATTCGGATGGATGCACAGATACTTATGCAGAGCAGGAAAGGCTTATCCTGACCAAGTTCAGGGATGTTCTTGGTGGACTCATTACTCTTGGTAACATAAAAGATTCCAGAAGCAGAAAGTGGGAGCAGAAATAA 1659 0.428 MEKSETTLDLAARRFVRHLDFTAVRGGPAYLTLSPPMPRPQNILQLPTQSCSPAQLTLDFQSLSQRRWIPSQPRWQQQRTSQSPPVMSYLQSPRPQLVSPVRRLQHPSQKLLVKRKHESSRSQPQHNAGLKDNTPKKQKHCNCKNSRCLKLYCECFAAGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNLNAFRPKIASSPLKPEVSMEEVSETQVTGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAVFQEEYRLVQIRQATNAAISGAVGPSSSVTHITPKKRKIPEIFSGKSFIDQTFDMTTQYQQGHHSNSACLDLKACETNKEFDPTASSPLSPLASFVSDTANTIIPGSSISTYRSVLADVLQTQNVKNLCSLLVVLSGEATKKNAEMRGKEVRKIETRKSEASTASSAQSLQDSREVVTPDCENHANKDVPDAVDIDIRNMPLSPETLELMCDEQDVMFFDNVSANGVAIGNTEHNMNQKSSNSDGCTDTYAEQERLILTKFRDVLGGLITLGNIKDSRSRKWEQK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04203 552 MobiDBLite consensus disorder prediction 427 443 - -
Vifa2g04203 552 PANTHER TESMIN/TSO1-RELATED 43 540 IPR028307 -
Vifa2g04203 552 MobiDBLite consensus disorder prediction 419 454 - -
Vifa2g04203 552 MobiDBLite consensus disorder prediction 70 139 - -
Vifa2g04203 552 SMART CXC_2 221 262 IPR033467 -
Vifa2g04203 552 SMART CXC_2 136 176 IPR033467 -
Vifa2g04203 552 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 224 258 IPR005172 -
Vifa2g04203 552 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 138 173 IPR005172 -
Vifa2g04203 552 MobiDBLite consensus disorder prediction 70 95 - -
Vifa2g04203 552 ProSiteProfiles CRC domain profile. 137 261 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04203 Vifa-Chr2 1233025853 1233030049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04203 94 545 CPP Transcription Factor Family AT4G29000 46.300 1.23e-119 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa2g04203 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04203 - K21776 gmx:100811459 640.958