Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04196 ATGCAGATCTTCGTCAAAACCCTAACGGAAAGAACCATCACCCTCGAGGTTGAATCCTCAGACACAATCGACAATGTCAAAGCCAAGATCCCGGACAAAGAAGGGATACCACCGGACCAGCAACGTCTCATCTTCGCCGGCAAACAGCTCGAAGACGGCCGCACTCTCGCTGACGACAACATCCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTCCGTGGTGTCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCGAAGAAGATTAAGCACAAGCATAGGAAGGTGAAGCTTGTTGTTCTGCAGTTTTACAAGGTTGATGATTACTGGCGGCGCAAGGTTGAGGAGAATATGAGGGAATCGTGA 372 0.5054 MQIFVKTLTERTITLEVESSDTIDNVKAKIPDKEGIPPDQQRLIFAGKQLEDGRTLADDNIQKESTLHLVLRLRGVAKKRKKKTYTKPKKIKHKHRKVKLVVLQFYKVDDYWRRKVEENMRES 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04196 123 Gene3D - 1 80 - -
Vifa2g04196 123 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vifa2g04196 123 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vifa2g04196 123 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa2g04196 123 FunFam Polyubiquitin 3 1 76 - -
Vifa2g04196 123 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Vifa2g04196 123 Gene3D - 81 123 IPR038582 -
Vifa2g04196 123 CDD Ubl_ubiquitin 1 75 - -
Vifa2g04196 123 PANTHER UBIQUITIN 1 87 - -
Vifa2g04196 123 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vifa2g04196 123 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vifa2g04196 123 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vifa2g04196 123 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04196 Vifa-Chr2 1230497221 1230497592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04196 1 109 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 92.661 8.17e-56 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04196 K02977 - psom:113276475 167.933