LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g04171	ATGTCAATGGTATCTATCATGGAAAGGGAACGAACACAAAAACGACCTCGTCTCGAATGGGATGTAGCTCCCCAACCTTCATTTCCGCAGGCACAGAGAATTTGCACGGTGGTTGGTGATGAAGGAACTGAGAAAAAGTATGCATCGCCTCCGAGAAGAAACGACGATCGGGATGGACATTATGTTTTCAATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCGGCAAAATGGGTGAAGGCACTTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTAATTAGAAGCATCCAGAAGTATCGCGACGCAGCAATGATCGAGGTTGATGTGCTGGAACGTCTTGCGAAGAGTGATGTGGGATGCTCACGGTGTGTACAGATTCAAAATTGGTTTGATTATCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTATGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTTAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTTTAGGGTGGTCAACCCCATGTGATTTGTGGAGTGTTGGATGTATTCTCTTCGAGTTATGCATGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTGGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTCAAAAGGCTAACAAAGGTGCAGAAAAATATTTCAAGCGTGGATCACGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAGGCTTGGTCATCTTAAGGACATTATATCGCGTCATGTAGAGTCCTCAAGGTCCTTGTTAGTTGATTTGTTGCATGGCTTATTAACTTATGATCCGGCCAAACGTATTACTGCTCGTCAAGCCCTTGATCACCGCTTCTTTAGGATTCCAACTTAA	1209	0.4268	MSMVSIMERERTQKRPRLEWDVAPQPSFPQAQRICTVVGDEGTEKKYASPPRRNDDRDGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLAKSDVGCSRCVQIQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSDYVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILFELCMGEALFQTHENLEHLAMMERVLGPLPEHMVQKANKGAEKYFKRGSRLRWPEGAVSRESINAVKRLGHLKDIISRHVESSRSLLVDLLHGLLTYDPAKRITARQALDHRFFRIPT	402

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa2g04171	402	CDD	PKc_CLK	60	398	-	-
Vifa2g04171	402	Gene3D	Phosphorylase Kinase; domain 1	60	153	-	-
Vifa2g04171	402	Pfam	Protein kinase domain	73	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa2g04171	402	FunFam	Serine/threonine-protein kinase AFC2	149	398	-	-
Vifa2g04171	402	SUPERFAMILY	Protein kinase-like (PK-like)	60	399	IPR011009	-
Vifa2g04171	402	PANTHER	SERINE/THREONINE-PROTEIN KINASE DOA-RELATED	34	399	-	-
Vifa2g04171	402	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	194	206	IPR008271	GO:0004672\|GO:0006468
Vifa2g04171	402	Gene3D	Transferase(Phosphotransferase) domain 1	127	398	-	-
Vifa2g04171	402	FunFam	Serine/threonine-protein kinase AFC2	60	153	-	-
Vifa2g04171	402	SMART	serkin_6	73	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g04171	Vifa-Chr2	1220136774	1220139861	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g04171	72	399	Core Cell Cycle Gene Families	AT3G48750	27.811	1.26e-28	112

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CLK	Vifa2g04171		Pkinase	1.4e-51	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g04171	K08287		-	gmx:100782453	703.36

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g04171	2	1220136774	1220139861	Vifa2g04171	2	1220136774	1220139861	ECH

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