Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04171 ATGTCAATGGTATCTATCATGGAAAGGGAACGAACACAAAAACGACCTCGTCTCGAATGGGATGTAGCTCCCCAACCTTCATTTCCGCAGGCACAGAGAATTTGCACGGTGGTTGGTGATGAAGGAACTGAGAAAAAGTATGCATCGCCTCCGAGAAGAAACGACGATCGGGATGGACATTATGTTTTCAATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCGGCAAAATGGGTGAAGGCACTTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTAATTAGAAGCATCCAGAAGTATCGCGACGCAGCAATGATCGAGGTTGATGTGCTGGAACGTCTTGCGAAGAGTGATGTGGGATGCTCACGGTGTGTACAGATTCAAAATTGGTTTGATTATCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTATGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTTAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTTTAGGGTGGTCAACCCCATGTGATTTGTGGAGTGTTGGATGTATTCTCTTCGAGTTATGCATGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTGGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTCAAAAGGCTAACAAAGGTGCAGAAAAATATTTCAAGCGTGGATCACGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAGGCTTGGTCATCTTAAGGACATTATATCGCGTCATGTAGAGTCCTCAAGGTCCTTGTTAGTTGATTTGTTGCATGGCTTATTAACTTATGATCCGGCCAAACGTATTACTGCTCGTCAAGCCCTTGATCACCGCTTCTTTAGGATTCCAACTTAA 1209 0.4268 MSMVSIMERERTQKRPRLEWDVAPQPSFPQAQRICTVVGDEGTEKKYASPPRRNDDRDGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLAKSDVGCSRCVQIQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSDYVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILFELCMGEALFQTHENLEHLAMMERVLGPLPEHMVQKANKGAEKYFKRGSRLRWPEGAVSRESINAVKRLGHLKDIISRHVESSRSLLVDLLHGLLTYDPAKRITARQALDHRFFRIPT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04171 402 CDD PKc_CLK 60 398 - -
Vifa2g04171 402 Gene3D Phosphorylase Kinase; domain 1 60 153 - -
Vifa2g04171 402 Pfam Protein kinase domain 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04171 402 FunFam Serine/threonine-protein kinase AFC2 149 398 - -
Vifa2g04171 402 SUPERFAMILY Protein kinase-like (PK-like) 60 399 IPR011009 -
Vifa2g04171 402 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 34 399 - -
Vifa2g04171 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vifa2g04171 402 Gene3D Transferase(Phosphotransferase) domain 1 127 398 - -
Vifa2g04171 402 FunFam Serine/threonine-protein kinase AFC2 60 153 - -
Vifa2g04171 402 SMART serkin_6 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04171 402 ProSiteProfiles Protein kinase domain profile. 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04171 Vifa-Chr2 1220136774 1220139861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04171 72 399 Core Cell Cycle Gene Families AT3G48750 27.811 1.26e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vifa2g04171 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04171 K08287 - gmx:100782453 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04171 2 1220136774 1220139861 Vifa2g04171 2 1220136774 1220139861 ECH