Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04168 ATGGAAGAAAGTGTTGGAAAGGAGAAAACCCTACCACCTGGATTTCGATTTCATCCTACAGACGAAGAACTCATCACTTGCTATCTCATAAACAAGATATCAGATTCTAGTTTTACAGGAAGAGCAATTACTGATATAGACCTCAATAAATTTGAACCATGGGACCTTCCAGGAAAAGCAAAGATGGGAGAAAAGGAATGGTACTTTTTCAGTATGAGAGATCGTAAATACCCAACAGGTGTAAGAACCAACCGAGCAACTAACACTGGATACTGGAAAACCACAGGAAAAGATAGAGAAATTTTCAACAGTGTTACGTCAGAGTTAGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGTAGAGCTCCTAGAGGAGAGAAAAGCAGTTGGGTTATACATGAATATCGTGTTCACTCTCAATCCACCTTCACAACAAACAAGGAGGAAGGATGGATAGTTTGTAGGGTATTCAAGAAGAGTGGAAGTGGGAAAAAGTATCCTAGTAATAATTCAAACCCTACAAAAGCAGGAGTGAATCTTTATAGCATGCAAGAAATAGGTCATAATCATATGATGCTGGGAGATTTTTCAGCTTCTCATCATAATTTCCTTTACGGATGGAATCATAATTATAATAGTACTGCTGCACCAACAGTGCAATATTCTCAGTTGAACTATCCTGCAAATATGTTGTCAGCAACAACAGGAGGAGGAGATGGAGGATTCAGCATTTCGGGGCTTAATTTGAATCTTGGAAATGGAGTAACTATTGCTGATCATGTGAACTCAGTAAACATGAATATGATGAATGCATGCAATAATATTAACTTTGTTGGTGCAGATCAGAATATTAATAATGTTGTAGGTTATGGGGTTGGTATGGAACATTGCACGGATCTTGACACTTACTGGCCTTATTCCTACTGA 930 0.3796 MEESVGKEKTLPPGFRFHPTDEELITCYLINKISDSSFTGRAITDIDLNKFEPWDLPGKAKMGEKEWYFFSMRDRKYPTGVRTNRATNTGYWKTTGKDREIFNSVTSELVGMKKTLVFYKGRAPRGEKSSWVIHEYRVHSQSTFTTNKEEGWIVCRVFKKSGSGKKYPSNNSNPTKAGVNLYSMQEIGHNHMMLGDFSASHHNFLYGWNHNYNSTAAPTVQYSQLNYPANMLSATTGGGDGGFSISGLNLNLGNGVTIADHVNSVNMNMMNACNNINFVGADQNINNVVGYGVGMEHCTDLDTYWPYSY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04168 309 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Vifa2g04168 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 209 - -
Vifa2g04168 309 FunFam NAC domain-containing protein 100-like 20 164 - -
Vifa2g04168 309 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Vifa2g04168 309 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Vifa2g04168 309 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04168 Vifa-Chr2 1219432684 1219433819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04168 7 306 NAC Transcription Factor Family AT2G24430 49.390 2.72e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g04168 NAM 2.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04168 - - lja:Lj1g3v2035130.1 368.237