Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04165 ATGGCGAGAACGGAATCGGATCTCGACGAGTTTCTCAACCTCGATTACGAACTAAGGTATCCGAGTCTTGCCGATACGGAAGCGTTCATGACCGCCGCTTTCCAAACTCTTTTACCGGATGTGGTAACTTCATTTTCAACTTGTGGTGGAGTTACAGATTCTCAAAACCTCACTCCCAAACATTCCACCGTCACTGCTACTATTGATTCTCAGTCATCCCTTTATGGCACTGTTGGAAGCCCAGTTTCAGCCAATAAATCAACTAGCAGAGAGAATCATACCAAAGGGACAACAAGTGGTTCATCTGATCCTTCTGATGAAGATGATGAATTAGGTCCTTGTGAACAAAGCACTAATCCACTCGATATCAAACGCCTTAGAAGAAAGGTTTCTAACCGCGAATCAGCCAGAAGATCAAGGCGAAGAAAACAAGCCCATTTGTCTGAACTTGAGTCCCAGGTTGAAAAACTGAAACTGGAAAATGCAACCCTATACAAACAGTTTACAAATACTAGTCAACAATTTCATGAGGCTGACACAAATAACAGAGTGCTAAAATCAGATGTAGAAGCTTTAAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTAGAAGCTCTTTCACCACATCATTAAACAATCAGTTTTTTCAGAATCAATGTCAAATAACGACACCGCCACAACTCAATGTGACATCCTTGCGTCGCGGGCCACATGTCTCACCAACCATCAATGTCCAACACGGAAATGGTGCCTCGTACGGTGGCGTTGCGGTCGGCGAACACAATTCAAATCTTCTTGGGTTTGGAAACTTGGACATGAGTAACTACAACGACATCATTGACAACGGAGTCTTAAGCAATGCTATGAGTTGTGTAACTACTACCTGGCCCTAA 897 0.4337 MARTESDLDEFLNLDYELRYPSLADTEAFMTAAFQTLLPDVVTSFSTCGGVTDSQNLTPKHSTVTATIDSQSSLYGTVGSPVSANKSTSRENHTKGTTSGSSDPSDEDDELGPCEQSTNPLDIKRLRRKVSNRESARRSRRRKQAHLSELESQVEKLKLENATLYKQFTNTSQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTSLNNQFFQNQCQITTPPQLNVTSLRRGPHVSPTINVQHGNGASYGGVAVGEHNSNLLGFGNLDMSNYNDIIDNGVLSNAMSCVTTTWP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04165 298 Coils Coil 182 202 - -
Vifa2g04165 298 MobiDBLite consensus disorder prediction 73 101 - -
Vifa2g04165 298 Pfam bZIP transcription factor 123 174 IPR004827 GO:0003700|GO:0006355
Vifa2g04165 298 Gene3D - 123 179 - -
Vifa2g04165 298 PANTHER BASIC LEUCINE ZIPPER 63 50 264 - -
Vifa2g04165 298 SUPERFAMILY Leucine zipper domain 124 175 IPR046347 GO:0003700|GO:0006355
Vifa2g04165 298 CDD bZIP_plant_GBF1 125 176 IPR045314 GO:0003700|GO:0006355
Vifa2g04165 298 Coils Coil 133 167 - -
Vifa2g04165 298 FunFam BZIP transcription factor 122 173 - -
Vifa2g04165 298 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 127 142 IPR004827 GO:0003700|GO:0006355
Vifa2g04165 298 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 122 185 IPR004827 GO:0003700|GO:0006355
Vifa2g04165 298 SMART brlzneu 120 184 IPR004827 GO:0003700|GO:0006355
Vifa2g04165 298 MobiDBLite consensus disorder prediction 73 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04165 Vifa-Chr2 1218296500 1218300275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04165 69 298 bZIP Transcription Factor Family AT5G24800 47.034 4.94e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g04165 bZIP_1 1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04165 K25784 - gmx:780555 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04165 2 1218296500 1218300275 Vifa2g04165 2 1218296500 1218300275 ECH