Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04148 ATGGATCAACCAAAGAAACCTAACAAGATCAGAGACATAGTTAGACTTCAACAAGTCCTTAAGAAATGGAGAAGAATAGCCAATGCTTCAAAAACAAGCAACAACAGTACCACTAGTAAGAGTATAAAGTTTCTTAAAAGAACACTTTCAATGTCCGAACGCGAAGGAGGAGGAGGATCGAGCGCGGTTCCAAAAGGGTACCTAGCAGTTTGTGTTGGTGTAGAACTTAACAGGTTTGTTATACCAACTGAGTATTTGACTCATAAAGCCTTTCATGTATTACTCAGAGAAGCAGAAGAAGAATTCGGATTCGAACAAACTGGTGTTCTGAGAATTCCTTGTGAAGTATCTGTGTTTGAGAGTATATTGAAGATGGTGGAAGGAAAAGATGGATTTTCTACTCAGAAATGTAGTTTTGGTATTGAAAAAATGATGGGATACTGTTCCTCAAACCAGCTTGGTTATTATCATCAACCTCATAGTCCTATGTGCAGATAG 498 0.3815 MDQPKKPNKIRDIVRLQQVLKKWRRIANASKTSNNSTTSKSIKFLKRTLSMSEREGGGGSSAVPKGYLAVCVGVELNRFVIPTEYLTHKAFHVLLREAEEEFGFEQTGVLRIPCEVSVFESILKMVEGKDGFSTQKCSFGIEKMMGYCSSNQLGYYHQPHSPMCR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04148 165 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 41 122 IPR003676 GO:0009733
Vifa2g04148 165 Pfam Auxin responsive protein 22 126 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04148 Vifa-Chr2 1211783737 1211784234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04148 3 165 Calmodulin-binding Proteins AT4G31320 52.062 1.47e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04148 K14488 - pvu:PHAVU_009G103800g 263.848