Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04143 ATGTGGTTGCCAAAGAATCAATCAGATAAGAAGGATGGTGTAAATGGATTAATAGCAGTGGCAATAGACAAAGAAAAGGGGAGCCAAAATGCACTCAAATGGGCTATCGACAATCTCCTCGCAAGAAACGCGACCGTAATTCTCATCCATGTCAAGGTTTTGGTGGCTTCTCTTTCTTCAACGCCTTCGATTTTCACCACAAGCAAATCTACAAGGGGCGCGGTAAACGCTAATGGTAACGACACAATAAGCAAAGAACGAGACGCTCAAAAAAACATTTTCCTCCCATATCGCGTCTTCTGTACACGCAAAGATATACAATGCAAGGATGTTCTACTAGAAGATTCAGATGTAGCAAAAGCATTGATTGATTATGCTTCTCAGGCAGGAATCGAGCATCTGGTTCTTGGATCTTCGACAAAAGCCGGTTTGCTCAAAAGATTCAAGGTATCAGATGTTTCGGGAACAGTGGCAAAAGGTGCACCGGATTTCTGTACAGTCTATGTCATTGGAAAAGGAAAGATTCAATCAATGCGATCTGCTTCTCGTCCTGCTCCAAGCATTTCCCCTCTACATGTTAATGAAACTACTATACAAGACCAACCAGACACCAATGTTGCGTCGGAACAAAGTGCAAGAGAACAAGAAAGGAATTCTTTCGATGCTTCGCAGGATGGAATCGATTCATTCAGGTCACCATTCACCAGGAAAGGTTACAATACCAAACAATACATGGAAAATTCGATGGTAGATGGTGATATATCCTTTGTGAGTTCTGGAAGGACGAGTATCGACCGCATGTTGCCTCCATTGTATAACAGCTCGGAGATGGGCAGTAGGATGTCAATTAGCTCGGAACAAGATTTAAACTACAGCTTTGAGTCTATGTTTCAAGGAAGGAATTCTATAGATTCCAGCATTCCTGCTGAATTTACATCACTGATGTTCGATAACGAAAGGCTTTCATCTTCATCGCAAGTCGTAGATGACATGGAGGCTGAAATGAGGAGATTAAAGTTGGAGCTCAAGCAAACAATGGAAATGTACAACACAGCTTGTAAAGAAGCACTTACAGCACAACAGAAGGCAATAGAACTTCAAAAATGGAAGTTAGAAGAAGAAAGGAGATTGGAAGAGGCGAGGGTAGCCGAGGAAGCTGCGTTGGCCATCGCTAAACAGGAGAAAGAAAAATCTAAAGCAGCCATTGAAGCTGCTGAAGCGCAAAAGAGGATAGCAGAACTAGAAGCACAGAAGAGACTTCAAGCAGAAATGAAAGCTCTTAGAGAAGCAGAAGAGAAAAGAAAAGTAATGGATGCTTTGGTAAATGTAGATGTTAGATATAGAAAGTATACAATAGAGGAGATTGAAGCTGCAACTAATTTTTTCTCACAATCCCTCAAGATTGGAGAAGGAGGATATGGTCCGGTTTTTAAGTGTCTTCTGGATCATACACCCGTTGCAGTCAAGGTTCTTCGTCCTGATGCGGCACAAGGAAGGTCGCAGTTTCAACGAGAGGTTGAGGTATTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCTTAGGAGCCTGTCCGGAATACGGCTGCCTAGTGTACGAGTACATGTCAAATGGAAGCTTGGATGATTGCCTGTTTCGTCGAGGAAACAATCCTCCGCTTTCTTGGCAGCTAAGGTTCAAAATTGCAGCCGAAATAGGCACGGGCTTGTTGTTCCTTCACCAGACAAAACCAGAACCTATAGTCCACAGGGACTTAAAACCAGGAAACATCTTACTAGACAGAAACTTCGTATCCAAAATCAGCGACGTGGGTTTGGCAAGACTAGTTCCACCGTCCGTCGCTGACAGCGTGACGCAATACCGCTTGACAACAACAGCTGGAACATTCTGTTACATCGATCCGGAGTATCAACAGACAGGAATGTTGGGTGTGAAGTCAGATATATACTCACTTGGGATCATTTTCCTTCAAATCTTGACAGCAAGATCACCAATGGGATTAGCACATAATGCTCAAAAAGCCATTGAAAATGGAACTTTTACCGAGATGTTGGATCCTGCGATTACTGATTGGCCAATGGAGGCCGTTATGAGTTTTGCAAATATAGCAATCAACTGCGCGGAGTTAAGGCGAAAAGATAGACCTGATCTCGGTAAGGTTGTGCTACCAGAACTTGACAGATTGAGAGTACTTGCTGATAAAAGTAACCAAAATTCAACACCAAATAGTCCTAGCTCGACGAATGGTTCCCATGAGACACAAATTTCAGTGCAGCTGGATGGAAGCTGTCCTCTATCTCCTCACTCGGATGAGGTTCGAAGAAACATAACAGTTGGTCTTTGA 2343 0.4319 MWLPKNQSDKKDGVNGLIAVAIDKEKGSQNALKWAIDNLLARNATVILIHVKVLVASLSSTPSIFTTSKSTRGAVNANGNDTISKERDAQKNIFLPYRVFCTRKDIQCKDVLLEDSDVAKALIDYASQAGIEHLVLGSSTKAGLLKRFKVSDVSGTVAKGAPDFCTVYVIGKGKIQSMRSASRPAPSISPLHVNETTIQDQPDTNVASEQSAREQERNSFDASQDGIDSFRSPFTRKGYNTKQYMENSMVDGDISFVSSGRTSIDRMLPPLYNSSEMGSRMSISSEQDLNYSFESMFQGRNSIDSSIPAEFTSLMFDNERLSSSSQVVDDMEAEMRRLKLELKQTMEMYNTACKEALTAQQKAIELQKWKLEEERRLEEARVAEEAALAIAKQEKEKSKAAIEAAEAQKRIAELEAQKRLQAEMKALREAEEKRKVMDALVNVDVRYRKYTIEEIEAATNFFSQSLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEYMSNGSLDDCLFRRGNNPPLSWQLRFKIAAEIGTGLLFLHQTKPEPIVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADSVTQYRLTTTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARSPMGLAHNAQKAIENGTFTEMLDPAITDWPMEAVMSFANIAINCAELRRKDRPDLGKVVLPELDRLRVLADKSNQNSTPNSPSSTNGSHETQISVQLDGSCPLSPHSDEVRRNITVGL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04143 780 SMART serkin_6 462 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04143 780 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 434 534 - -
Vifa2g04143 780 SUPERFAMILY Protein kinase-like (PK-like) 445 721 IPR011009 -
Vifa2g04143 780 Coils Coil 321 348 - -
Vifa2g04143 780 Coils Coil 354 433 - -
Vifa2g04143 780 Pfam Universal stress protein family 18 162 IPR006016 -
Vifa2g04143 780 Gene3D HUPs 17 171 IPR014729 -
Vifa2g04143 780 ProSiteProfiles Protein kinase domain profile. 462 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04143 780 FunFam Os07g0541700 protein 535 624 - -
Vifa2g04143 780 PANTHER OS02G0152300 PROTEIN 18 746 - -
Vifa2g04143 780 CDD STK_N 17 173 - -
Vifa2g04143 780 MobiDBLite consensus disorder prediction 732 763 - -
Vifa2g04143 780 Gene3D Phosphorylase Kinase; domain 1 441 534 - -
Vifa2g04143 780 MobiDBLite consensus disorder prediction 180 213 - -
Vifa2g04143 780 Gene3D Transferase(Phosphotransferase) domain 1 535 749 - -
Vifa2g04143 780 MobiDBLite consensus disorder prediction 732 780 - -
Vifa2g04143 780 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 171 - -
Vifa2g04143 780 Pfam Protein kinase domain 464 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04143 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Vifa2g04143 780 MobiDBLite consensus disorder prediction 180 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04143 Vifa-Chr2 1210222054 1210225291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04143 1 743 Receptor kinase-like Gene Family AT1G78940 54.830 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa2g04143 Pkinase 1.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04143 - - gmx:100803867 1047.34