Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04142 ATGGAGCCTGTACCAAGCGGAAATCTGCCTCCTGGTTTTGATGCTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCCGAAGTTTTTCAGAGTGCTGGCCCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCTTCTTATGGTTTTGTGGACTACCATGATCGAGCATCCGCAGCACTTGCAATAATGACATTGCATGGTCGACAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACCTCAGGGCACTTCAATGTATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACGGGTAAATGGCTGGGAAATAGACAAATAAGATGCAATTGGGCAACTAAAGGTGCTGGTGGCAGCTCAAATGAAGAGAAGATCAATGACAGCCAAAATGCCGTTGTGCTTACAAATGGGTCTTCAGATGGAGGTCAAGATAACAGCAATGAGGATGCTCCTGAAAATAATCCTTTATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGAGCTGGGGTACTTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTAAGATACAATACTCACGAGGAAGCAGCACTGGCTATTCAGATGGCTAATGGAAGACCAGTTCGTGGGAAGACGATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCTTCAAATCCATTACCTCCTCCTGCTGCACAGCCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTACTCTCCCGCTGAGTTGTTGGCTTATCAGCGCCAGCTGGCCTTGAGTCAGGCCGCCGTATCTGGCCTTTCTGGACAAGCTCTTCTTCAAATGTCTGGACAGCATGGCCTAGCTCCCGCTTCAATGGGTATAAACTCTGCGGCATCTCAAGCCATGTATGATGGATATACTGGTAATTCGTCAAGACAGCAGCTTATGTACTATCGTTGA 1200 0.4542 MEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPLYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYTGNSSRQQLMYYR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04142 399 Gene3D - 5 100 IPR012677 -
Vifa2g04142 399 Gene3D - 101 195 IPR012677 -
Vifa2g04142 399 FunFam Oligouridylate-binding protein 1C 203 304 - -
Vifa2g04142 399 SUPERFAMILY RNA-binding domain, RBD 212 304 IPR035979 GO:0003676
Vifa2g04142 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 93 IPR000504 GO:0003723
Vifa2g04142 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 300 IPR000504 GO:0003723
Vifa2g04142 399 SUPERFAMILY RNA-binding domain, RBD 5 97 IPR035979 GO:0003676
Vifa2g04142 399 MobiDBLite consensus disorder prediction 291 313 - -
Vifa2g04142 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Vifa2g04142 399 FunFam Nucleolysin TIAR-like protein 102 201 - -
Vifa2g04142 399 SUPERFAMILY RNA-binding domain, RBD 98 198 IPR035979 GO:0003676
Vifa2g04142 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Vifa2g04142 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Vifa2g04142 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 294 IPR000504 GO:0003723
Vifa2g04142 399 MobiDBLite consensus disorder prediction 201 222 - -
Vifa2g04142 399 CDD RRM2_PUB1 103 182 - -
Vifa2g04142 399 Gene3D - 204 304 IPR012677 -
Vifa2g04142 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 303 - -
Vifa2g04142 399 SMART rrm1_1 20 89 IPR000504 GO:0003723
Vifa2g04142 399 SMART rrm1_1 227 296 IPR000504 GO:0003723
Vifa2g04142 399 SMART rrm1_1 105 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04142 Vifa-Chr2 1210213567 1210219892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04142 20 294 Eukaryotic Initiation Factors Gene Family AT3G16380 26.712 3.19e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04142 K13201 - gmx:100790916 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04142 2 1210213567 1210219892 Vifa2g04142 2 1210213567 1210219892 ECH