Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04137 ATGGAGCTCAAAAATGAGAAACTAGTCAGGTTCTCTAATGATGGAAAGGTTAATCTTGAGAAGCCAATGCAAGTTTACAAATTTCAGAAAATTCTTAATCCGAACGATATTGATATTGATACTGATAGTGATAAGAACAGAATGAATATCAAGTTTCCGAGTTTTGGAAAGTTAAAGGTTTTTCAAGAAAATCATGAACCATGGAAGAAGAGAATTCTTGATCCGGGAAGTGATTTATTTCTCGAGTGGAAACGAGCTTTCTTGTTTTCTTCCATACTATCACTTTTTGTTGATCCGTTGTTTTTCTATCTCCCGTCCGTATCAGTAGAAACTGATAATAAGAATTCGTCGTGCATGGTTACTGATTTGAATTTAGGAATCGTTGTCACGTGTTTCCGGACATTCGCCGATGTTTTCTATCTGCTGAACATGGTCATTAAGTTTAGGACAGCCTTTGTGTCACCGAGTTCAAGGGTTTTTGGAAGAGGCGAGCTTGTCATGGACCCGAGGTTAATTGCGAGGCGCTATTTGAGATCGGAGTTTTTCTTAGATCTTTTAGCTACATTGCCTCTTCCTCAGATTGTGATTTGGTTTATCATGCCAGCAATTCGAAGCTCTCATGCCGATCATACCAACAATGCACTAGTACTGATTGTTCTGCTTCAATATGTTCCTCGATTGTATATGATTTTCCCTTTAAGTTCTCAGATTGTTAAAGCTACTGGAGTTGTCACAAAGACGGCTTGGGCCGGAGCGGCTTATAATCTTTTACTTTACATGTTAGCTAGTCACGTGTTAGGGGCATCATGGTATTTGCTGTCAATCGAAAGGTACACGACTTGCTGGAAATCTGAATGCAGAAATGAAAACTTACCTGTGAAATGTGTTCTTGACTACCTTGATTGTAGTAGTATAAACGATGCCGGTCGCGTGAAATGGATGAATACTACTTCTGTGTTTAGTAACTGTAATCCTGAAAGTAGCACAGATTTCAACTATGGAATTTTCGGAAATGCAGTTCAAAATAATGTTCTGTCTTCTGTGTTTATAGAGAAGTACCTCTATTGCTTGTGGTGGGGATTGCAGAATTTGAGTTCCTATGGCCAGAGTTTGAGTACAAGCACATTTGTTTGGGAAACTGCATTTGCAATACTCATAGCTATCTTAGGTCTGGTTTTGTTTGCTCACTTAATTGGTAACATGCAGACATATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGAGACGTGACACGGAAGAGTGGATGAAACATCGCCAACTCCCGGAGTTTCTTAGAGAGCGTGTTCGGAGATTTGTTCAGTATAAATGGCTTGCAACTCGAGGTGTTGATGAAGAAACTATCCTAAGAGGCCTACCCACAGATCTTTGTAGAGATATCCAGCGTCACCTTTGTTTAGACCTAGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAACTACTTGACGCAATATGCGAGCGATTGGTATCATCTTTGAGTACCCAAGGCACATACATTGTCAGAGAAGGAGATCCAGTTACCGAGATGCTTTTTATCATCAGAGGGAAACTCGAAAGCTCAACCACAAATGGTGGCAGAACTGGTTTCTTTAACTCCATTACCTTGAGGCCTGGCGATTTTTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAAATCTACTCTCAACTTGCCTTCTTCTACAAGAACAGTTAAAGCCCTTGTTGAAGTTGAAGCCTTTGAACTTAGAGCAGAAGATCTTAAATTTGTGGCAAATCAGTTTCGACGTCTTCACAGCAAGAAGTTGCAGCATACGTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCTGCTTGTTTCATTCAAGTCGCTTGGCGCCGGTTCAAGAAGAGAGTCTTGGCAAATAGCCTTAGTCTGAGAGAATACAAGTCCTTCATCGATGAACAAGCAAGAAATCGAATGGAACACGAGAAAGAAGAGCGCGGCTTAGTAACTTCAAACACTGCACAAGTAAAACAGAATCTCGGTGTCACTATATTGGCTTCAAGATTTGCTGCAAACACAAGGAAAGGGGTTCAGAAGATCAAGGATGTAGAGATGCTCAAGTTGCAAAAGCCTGAAGAGCCAGATTTCTCAGTAGAGCATGAAGATGATTAA 2175 0.4083 MELKNEKLVRFSNDGKVNLEKPMQVYKFQKILNPNDIDIDTDSDKNRMNIKFPSFGKLKVFQENHEPWKKRILDPGSDLFLEWKRAFLFSSILSLFVDPLFFYLPSVSVETDNKNSSCMVTDLNLGIVVTCFRTFADVFYLLNMVIKFRTAFVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLLATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYMIFPLSSQIVKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERYTTCWKSECRNENLPVKCVLDYLDCSSINDAGRVKWMNTTSVFSNCNPESSTDFNYGIFGNAVQNNVLSSVFIEKYLYCLWWGLQNLSSYGQSLSTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPEFLRERVRRFVQYKWLATRGVDEETILRGLPTDLCRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFELRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQVAWRRFKKRVLANSLSLREYKSFIDEQARNRMEHEKEERGLVTSNTAQVKQNLGVTILASRFAANTRKGVQKIKDVEMLKLQKPEEPDFSVEHEDD 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04137 724 CDD CAP_ED 484 615 IPR000595 -
Vifa2g04137 724 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 60 717 - -
Vifa2g04137 724 SMART cnmp_10 484 615 IPR000595 -
Vifa2g04137 724 ProSiteProfiles cAMP/cGMP binding motif profile. 484 567 IPR000595 -
Vifa2g04137 724 Pfam Cyclic nucleotide-binding domain 507 595 IPR000595 -
Vifa2g04137 724 Gene3D Helix hairpin bin 412 475 - -
Vifa2g04137 724 SUPERFAMILY cAMP-binding domain-like 414 606 IPR018490 -
Vifa2g04137 724 PRINTS EAG/ELK/ERG potassium channel family signature 397 406 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04137 724 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04137 724 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04137 724 PRINTS EAG/ELK/ERG potassium channel family signature 379 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04137 724 PRINTS EAG/ELK/ERG potassium channel family signature 447 454 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04137 724 FunFam Cyclic nucleotide-gated ion channel 1 482 600 - -
Vifa2g04137 724 Gene3D - 106 410 - -
Vifa2g04137 724 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
Vifa2g04137 724 Pfam Ion transport protein 83 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa2g04137 724 Gene3D Jelly Rolls 482 602 IPR014710 -
Vifa2g04137 724 SUPERFAMILY Voltage-gated potassium channels 78 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04137 Vifa-Chr2 1208138676 1208141373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04137 10 720 Ion Channels AT2G24610 69.124 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04137 K05391 - gmx:100803334 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04137 2 1208138676 1208141373 Vifa2g04137 2 1208138676 1208141373 ECH