Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04136 ATGACTCGCGTGTACATTGGGAATCTGGATTCTCGAGTTTCTGAGAGGGATCTGGAAGATGATTTCCATGTTTTTGGAGTTATACGAAGTGTGTGGGTTGCAAGGAGGCCTCCTGGTTATGCTTTCATTGATTTTGATGACCGCAGAGACGCACTGGATGCTATCCGAGAGTTAGATGGTAAGAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAAAACTGGAGGTGGAGGAGGAGGAAGAGGTGGCGGAGGTGGTGGTCGTGGTCGGTCTGGTGGGGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGCGAGTGTCATTCTTCTCGTGGTGGTGGAGGGGGAGGAAGACGTCGGAGCCGCAGTCCACCTCGATTGCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGAGCGGTCCCCTAGACGACGAAGCCCTTCTCCTCGTCGTCGCAGCCCTTCACCCCGTCGCCGCAGCTTCAGCAGGTCACCCCCTCCTTACCGTGGACGGGAGGCCGTAGCACATGCTAACGGAAATGGGATAAGGGATGCACCTCGAAGCAGAAGTTGA 600 0.54 MTRVYIGNLDSRVSERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSKTGGGGGGRGGGGGGRGRSGGGGSDLKCYECGEPGHFARECHSSRGGGGGGRRRSRSPPRLRRSPSYGRRSYSPRERSPRRRSPSPRRRSPSPRRRSFSRSPPPYRGREAVAHANGNGIRDAPRSRS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04136 199 Gene3D - 99 171 - -
Vifa2g04136 199 SUPERFAMILY RNA-binding domain, RBD 2 96 IPR035979 GO:0003676
Vifa2g04136 199 CDD RRM_SRSF3_like 3 71 - -
Vifa2g04136 199 Pfam Zinc knuckle 99 113 IPR001878 GO:0003676|GO:0008270
Vifa2g04136 199 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Vifa2g04136 199 MobiDBLite consensus disorder prediction 153 167 - -
Vifa2g04136 199 MobiDBLite consensus disorder prediction 111 199 - -
Vifa2g04136 199 FunFam Serine/arginine-rich splicing factor RSZ22A 96 159 - -
Vifa2g04136 199 Gene3D - 1 98 IPR012677 -
Vifa2g04136 199 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Vifa2g04136 199 SUPERFAMILY Retrovirus zinc finger-like domains 90 118 IPR036875 GO:0003676|GO:0008270
Vifa2g04136 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Vifa2g04136 199 MobiDBLite consensus disorder prediction 66 94 - -
Vifa2g04136 199 ProSiteProfiles Zinc finger CCHC-type profile. 99 113 IPR001878 GO:0003676|GO:0008270
Vifa2g04136 199 SMART rrm1_1 3 69 IPR000504 GO:0003723
Vifa2g04136 199 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 174 - -
Vifa2g04136 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04136 Vifa-Chr2 1208024600 1208026749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04136 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 41.270 9.76e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04136 K12896 - mtr:112419871 225.713