Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04134 ATGGCTAATGAGTTTTCTCAGGTGAATCCTATCCAGTTTTTCAAGATCATATGTGATCAAAACCTTCATCAACAAAAGCTTATGATGCCTACAAAGTTTGTGGAGAAATATGGAGAAAATTTACCAGAAGATATTTATCTAGAGACTCCAAATGGTGAAAAATGGAATTTAAATTTAGTGAAAAGTGAAGGCAAAATATGGTTTGACAAGGGTTGGAATGAATTTGTAGAGTATCATTCTCTATCTCATGGTCATCTTCTAGTTTTCAAATATGAACAAATCTCCCATTTTAAGGTACACATCTTTGATAAGACTACCTTAGAGATAAACTACCCTTTCAAAAAAGTTGATGCTCAAAGTGTCCCCAATGATGAAGATTTGGAAAATATTGAAAGTAGAAAAACAGGATGTTTTAGTTTTGCAGGTAAGGAATTGGTTATTGCTGAGAAACCTACAGCCCTTGAGAGAGCAATCTCTTTCAAAGCTTGTAATCCATCCTTTCATATTATCATGCGTCCATCATACATTGATTCTGCATCCAAACTGTATATACCAAAGGAGTTTGGTAGAAAATACTTGATAGATTTGGACGCAAACAATGGAGATATTCATCTTAGGTTACTGGATGGGAGAGTTTGGCCTGCAAAGTACCTAACTAGGAAAGTCTTTATAAATAAAGAAAGATTTGAAGTGATTTCAAAAGGATGGAGAACATTTACAAAAGACAACAACTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTCTTCCCTACTAGCACTCCACTTACCTTCCTTGTTCACATTTTTAGAGATTCTTTTGAAACATAG 828 0.3454 MANEFSQVNPIQFFKIICDQNLHQQKLMMPTKFVEKYGENLPEDIYLETPNGEKWNLNLVKSEGKIWFDKGWNEFVEYHSLSHGHLLVFKYEQISHFKVHIFDKTTLEINYPFKKVDAQSVPNDEDLENIESRKTGCFSFAGKELVIAEKPTALERAISFKACNPSFHIIMRPSYIDSASKLYIPKEFGRKYLIDLDANNGDIHLRLLDGRVWPAKYLTRKVFINKERFEVISKGWRTFTKDNNLKVGDVCTFELFPTSTPLTFLVHIFRDSFET 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04134 275 Gene3D - 146 272 IPR015300 -
Vifa2g04134 275 SUPERFAMILY DNA-binding pseudobarrel domain 11 112 IPR015300 -
Vifa2g04134 275 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vifa2g04134 275 Pfam B3 DNA binding domain 167 271 IPR003340 GO:0003677
Vifa2g04134 275 Pfam B3 DNA binding domain 14 104 IPR003340 GO:0003677
Vifa2g04134 275 CDD B3_DNA 165 270 IPR003340 GO:0003677
Vifa2g04134 275 ProSiteProfiles B3 DNA-binding domain profile. 167 272 IPR003340 GO:0003677
Vifa2g04134 275 SMART B3_2 13 105 IPR003340 GO:0003677
Vifa2g04134 275 SMART B3_2 167 272 IPR003340 GO:0003677
Vifa2g04134 275 SUPERFAMILY DNA-binding pseudobarrel domain 161 271 IPR015300 -
Vifa2g04134 275 Gene3D - 5 106 IPR015300 -
Vifa2g04134 275 CDD B3_DNA 13 103 IPR003340 GO:0003677
Vifa2g04134 275 PANTHER B3 DOMAIN-CONTAINING 5 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04134 Vifa-Chr2 1207817298 1207818579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04134 12 117 B3 DNA Binding Superfamily AT1G49475 40.566 3.21e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g04134 B3 2.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04134 - - mtr:120577159 272.707