Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04130 ATGCTTCCTCAGCGAATGAAGAAAGCCGTTACTGATAACCCTAAAAAGCTCGCAAACTTGATCGATCTCGTTAACCTTCCTCCCACTCTCAGAGACTTCGTCGGTCAATCTCAGACTTCTCAATTAACCTGTTTCATGCGTGTTTGGTCCTACGTCAAAACCAACAATCTTCAGGATCCAAATAACAAGAACATGGTAAACTGTGATGAGAAGTTAAAAGGAAAGTTCGATGATGCTTTGCAGAAGTATAAGTTGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCGTATGACGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGCCAGGCATATAAGGAACGAGGCCTGCTACAGGATGCCGTCACTGATTTGAGAAATGCACTTGAAGTGTCTCCTGATGATGATATAATTGGAGAGCTTTTACGGGACACCAAGGAACAGTTGATAAAGGAAGGTGGTCATTATGCTCCTGGAAGATTAGTAATTGAAGAAATAACTGAAGAAGTTGAGAATAGTTACAATATAGCTAACAATGGAAATCTAAAATCAAATTCAGACAGTATAGATACACTGAAGAAAGATCCAGAAGCCATCAGATCATTCATAAATTTTATTTCCAAAGCTGATCCTGCCACTCTGGCTTCTTTGAACATTGGGCAATCCCAAGACGTGTCTCCAGATATGATTAAAGCGTCCTCGGATATGATCGGCAAGATGTCACCCGAGGAACTTCAAAAAATGTTCGACATGGCGTCTTCATTTCAAGGGAACAACCCATTTCTCAGAGGAGGTTCCTCTGATTCTCCTTTCAACTCTGGATCAGTTCCTCCCAATGTGACACCTGATATGCTTAAAACAGCAACTGATATGATAAGTAAAATGCCACCGGATGACCTTAAGAAGATGTTTGAAATGGCATCCTTAATGAAAGGGAAAGAATCTATTCCATCAGCAGCAGCTGTAGACAAGAAAGGAAGAAATTTGTCACAGTCAAACTTCCCATCCTCAAGCACCACTCGTGCTTTTGGAGAATCAAGTTCTTCTGACAATGCGTTTTCAAATATTATAAATGCTTCAGAGCCAAACTTCCCATCCTCAAGTACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGACAGTTCACCGTCGGAGTTCTACCATTATATTTGGTTACATTCACAGGTATATTGTTTGTTTTAGCGGAAGTTGTCAAACAACATCTATGTCGATCGTTTCCAGATCGACATCTTCTTCTGCAGAAAGTGAACAAATAA 1398 0.4027 MLPQRMKKAVTDNPKKLANLIDLVNLPPTLRDFVGQSQTSQLTCFMRVWSYVKTNNLQDPNNKNMVNCDEKLKGKFDDALQKYKLAKENIKEIPSFQSRKLLLACSLNLMACYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKERGLLQDAVTDLRNALEVSPDDDIIGELLRDTKEQLIKEGGHYAPGRLVIEEITEEVENSYNIANNGNLKSNSDSIDTLKKDPEAIRSFINFISKADPATLASLNIGQSQDVSPDMIKASSDMIGKMSPEELQKMFDMASSFQGNNPFLRGGSSDSPFNSGSVPPNVTPDMLKTATDMISKMPPDDLKKMFEMASLMKGKESIPSAAAVDKKGRNLSQSNFPSSSTTRAFGESSSSDNAFSNIINASEPNFPSSSTDLQEQMRNQMKDPAMRQFTVGVLPLYLVTFTGILFVLAEVVKQHLCRSFPDRHLLLQKVNK 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04130 465 MobiDBLite consensus disorder prediction 354 382 - -
Vifa2g04130 465 ProSiteProfiles SWIB/MDM2 domain profile. 19 103 IPR003121 -
Vifa2g04130 465 MobiDBLite consensus disorder prediction 360 382 - -
Vifa2g04130 465 SMART tpr_5 137 170 IPR019734 GO:0005515
Vifa2g04130 465 SMART tpr_5 103 136 IPR019734 GO:0005515
Vifa2g04130 465 Gene3D Tetratricopeptide repeat domain 105 186 IPR011990 GO:0005515
Vifa2g04130 465 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
Vifa2g04130 465 CDD SWIB-MDM2_like 24 78 - -
Vifa2g04130 465 Pfam SWIB/MDM2 domain 24 76 IPR003121 -
Vifa2g04130 465 SUPERFAMILY TPR-like 73 177 IPR011990 GO:0005515
Vifa2g04130 465 SUPERFAMILY SWIB/MDM2 domain 13 76 IPR036885 -
Vifa2g04130 465 Gene3D SWIB/MDM2 domain 19 104 IPR036885 -
Vifa2g04130 465 SMART swib_2 20 94 IPR019835 -
Vifa2g04130 465 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 221 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04130 Vifa-Chr2 1206766687 1206772311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04130 50 170 Calmodulin-binding Proteins AT5G48570 33.088 2.01e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa2g04130 SWIB 9.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04130 - - lja:Lj3g3v2923190.2 546.969