Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04124 ATGGATGGTAAAAGAGCCAACGATGGGGTTATAGTCCCCATAAAGGGGATAGGCAGCAGTATGTTAAAAGATACTGTAAACACTCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTCGGCTCTTCTAAAGGTTCTCATATTGGTTCCTCTGAAAAGGGTAAATCTTTGAGGCCTTCATTTCGATTCTCATCAAATGGTAAGGAAACAATTGGTAGCTCCTCTAGAACTTCCTCGGGAAGTAGTAACCCGGGAAAACCCCATAGAAAGCCTCAGAAAACATTAGCATCTCATATAGACATAGATTCATCTGAAACTAGTAGCGTACAAGATGAACCACAAGTTTCAAAACCAGCACCTCCACCTGAAAAAAGTAAGAGGGGTCTTCAAGCTGAGGGTGTAACACGGGTTCAGGAAGTAGGGAGTTCTAGTGTAGCATCTAATACAAGATCTAGGAGGAATTTTCATCCGAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACGGGTCCAGGGACTCGTGCTGGTACCAATAGGTATGGGTTAAGAAACCTCAAATGCAACTCCGCCTCCGATGTCGTTCCTGCAGGTTGTGCACCATCAGATTCAAACCTTAACAGAAGAAATGATTCCATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCTACAGCTAGAGGGAAAAAAATCAATGGGCCCTCAGGTGAAGGACGAAATTCTGTTTCCCGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGAAATGCCCCTCACAGGGACAGGCCAGAAAACAACACGGTATCTGTTAGGACACGAAGATCAATTGGCGGTCATGCTAGGGGAAGGCTTTCTGGTCAAGGAAATGCTAATCCTGTGGTACCTAATCAGCAGTCTCTTATCATGGTACCTTCATTTTCTCATTCTGGCAATCGTAATGCTCTTGGTGTACAAGATCGTAGTTCTCCGGAGTCTCCTTCAAGTCCAAGCTCTCACAGTGGAGCAGGTACTAGCAGCGAGGAGTTATACGGTGTTATAGCTCCTACAGAATATGGCCTCACTCATTCTCTAATGAATCGGGATAGCTTTCGACGGCGCTACAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTGACACACGAGCAAATTCTTTTGCTGGAGTCCAATTTGTTCCTCACTGGATTAAACTTCTACGATCAGCATAGAGACATGCGATTAGACATTGATAATATGTCCTACGAGGAACTACTTGCTCTTGAAGACAGGATGGGGACTGTGAGCACAGCTGTAACAGAAGAAGCTCTGTCGGAATGTCTAAAGAGAAGTTCCTATCAATACTCTGACAGTGCATCTAAGGAAGATATCAAATGCAGCATCTGTCAGGAGGAATATGCTTTGGAGGAAGAAGTTGGGAGTCTGAAATGCGAGCACAAGTATCACTTGGCTTGCATACAGCAGTGGCTGCGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCATCGTCAAGTTCACCGCCGTCGCACTAG 1572 0.4459 MDGKRANDGVIVPIKGIGSSMLKDTVNTRNGQVCSRLGCSSKVGSSKGSHIGSSEKGKSLRPSFRFSSNGKETIGSSSRTSSGSSNPGKPHRKPQKTLASHIDIDSSETSSVQDEPQVSKPAPPPEKSKRGLQAEGVTRVQEVGSSSVASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTNRYGLRNLKCNSASDVVPAGCAPSDSNLNRRNDSIKKRNCEGESSSTARGKKINGPSGEGRNSVSRNGISISDSRISRNAPHRDRPENNTVSVRTRRSIGGHARGRLSGQGNANPVVPNQQSLIMVPSFSHSGNRNALGVQDRSSPESPSSPSSHSGAGTSSEELYGVIAPTEYGLTHSLMNRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEDRMGTVSTAVTEEALSECLKRSSYQYSDSASKEDIKCSICQEEYALEEEVGSLKCEHKYHLACIQQWLRLKNWCPICKASVASSSSPPSH 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04124 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 517 IPR013083 -
Vifa2g04124 523 SMART ring_2 470 510 IPR001841 -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 309 341 - -
Vifa2g04124 523 SUPERFAMILY RING/U-box 460 516 - -
Vifa2g04124 523 Coils Coil 382 402 - -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 257 271 - -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 210 225 - -
Vifa2g04124 523 Pfam Ring finger domain 469 511 IPR001841 -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 164 178 - -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 139 157 - -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 226 256 - -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 100 117 - -
Vifa2g04124 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 515 IPR045191 GO:0061630
Vifa2g04124 523 MobiDBLite consensus disorder prediction 38 53 - -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 60 91 - -
Vifa2g04124 523 ProSiteProfiles Zinc finger RING-type profile. 470 511 IPR001841 -
Vifa2g04124 523 MobiDBLite consensus disorder prediction 38 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04124 Vifa-Chr2 1204610455 1204612618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04124 375 511 C3H Transcription Factor Family AT2G15530 43.972 9.51e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04124 - - gmx:100787213 662.914