Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04117 ATGGCGATCAAACCCACCAAAGCTGAGAAGAAGCAGAACTACGATGCTAAGCTCTGCCAACTCATCGATGAATTCACCCAAATCCTTGTTGTTAACGCCGACAATGTCGGATCTAACCAGCTTCAGAGCATTCGTAGCGGTCTACGTGGTGACTCGGTTGTTCTCATGGGGAAGAACACCATGATGAAACGTTCCATTCGTATCCATGCTGAGAAAACCGGGAACAATGCATTCCTCAACCTTATTCCCCTTCTTGTCGGAAATGTTGGTTTGATTTTCACAAAAGGTGACTTGAAGGAAGTTAGCGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGACGTCGTTGTGCCTCCTGGCAACACAGGGCTCGACCCCTCTCAGACTTCTTTCTTCCAGGTGCTTAACATTCCAACCAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTGGAACTCATTAAGAAAGGAGAGAAGGTTGGATCTTCTGAAGCTGCCTTGCTTTCCAAGTTAGCCATAAGGCCGTTTTCATACGGGCTTGTGGTCCTTAATGTTTATGAGAATGGTTCAGTTTTTAGCCCTGAGGTTCTTGACCTCACCGATGATGACCTCGTTCAGAAGTTCGCTGTTGGGGTCTCAATGGTTACTTCACTTTCTTTGGCAATCTCATACCCAACACTTGCAGCTGCTCCTCATATGTTTGTCAATGCCTACAAGAACGTTCTAGCTGTTGCAGTTGCTACAGAATATTCTTTCCCCGAGGCAGACGAGGTTAAAGAGTACCTAAAGGACCCAAGTAAGTTTGCTGTAGCTGCAGTTGCTGCACCAGCTGCTGCTTCCAGTGCTGCCCCTGCTGCTGCGAAGGAGGAGACAAAGAAGGAAGAGCCTGAAGAAGAATCCGATGAAGACATAGGTTTCGGCCTGTTTGATGAATAA 966 0.4679 MAIKPTKAEKKQNYDAKLCQLIDEFTQILVVNADNVGSNQLQSIRSGLRGDSVVLMGKNTMMKRSIRIHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLSKLAIRPFSYGLVVLNVYENGSVFSPEVLDLTDDDLVQKFAVGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVATEYSFPEADEVKEYLKDPSKFAVAAVAAPAAASSAAPAAAKEETKKEEPEEESDEDIGFGLFDE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04117 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vifa2g04117 321 CDD Ribosomal_P0_L10e 9 185 - -
Vifa2g04117 321 Pfam 60s Acidic ribosomal protein 234 319 - -
Vifa2g04117 321 Pfam Ribosomal protein L10 7 108 IPR001790 -
Vifa2g04117 321 MobiDBLite consensus disorder prediction 305 321 - -
Vifa2g04117 321 FunFam 60S acidic ribosomal protein P0 113 186 - -
Vifa2g04117 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Vifa2g04117 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 305 - -
Vifa2g04117 321 Gene3D - 6 209 IPR043141 -
Vifa2g04117 321 PIRSF L10E 1 320 IPR030670 GO:0042254
Vifa2g04117 321 MobiDBLite consensus disorder prediction 288 321 - -
Vifa2g04117 321 Gene3D - 114 185 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04117 Vifa-Chr2 1202100685 1202102137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04117 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 79.937 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04117 K02941 - vvi:100250067 514.612