Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04114 ATGATTCCATCTCTGGTTAGAAGACGCTCAAGTGGTGAAGTAAGAAAGTTGGCCTCAATTTCTAACAGTCTCTTACCAGCATTTGGCACTAATCTTGATGAAGGTTACTTCAACCTTAAGAAATATACCATTGCGCCCTATGATCGAAGATATCGATTCTGGCAAACGTTCCTAGTGGCATTGGTGGTGTATTCTGCATGGGCATCTCCATTTGAGTTGGCTTTCAGAGAGATGTCAATCGGGTCGCTGTTAATAACTGATCTCTTTGTCGATGCTTTCTTTGCATTTGACATAATCCTAACTTTCTTCGTGGCCTACTTGGATACATCAACTTATTTCCTTGTTGATGACCATAAGGAGATTGCTATCAGGTACGTCAAGCATTTATGTTTTCCCATGGATCTAGCTTCAACTCTGCCATTTCAACAGATGTATCAACTTATAGCCGGCAAATCACACGATAGAGGAGAAGTCTTTGGTTTTCTTAACATGCTTAGACTTTGGCGATTGAGACGTGTTAGCGAGCTCTTCTCAAGGCTAGAGAAAGACATAAGGGTTAGCTACTCGTTAACAAGAGTCTGTAAACTTTTATGCGTTACGCTATTTGCAGTGCATTTCACAGGCTGCGTGTATTTTTGGTTGGCTTACCATCACGAATCACCCGAAAATACATGGATTGGGAAGGAGGTAAAGGATTTTAAGCAAAGGAGTGTGGGGTCAGGATACACTTACTCCATGTACTGGTCTATTGTAACCCTTACTACCGTTGGCTATGGAGATTTGCATGCAGAAAATACAACGGAGAAGGTTTTCAATATATTTTATATGTTGTTTAACATCGGCCTCACTGCATATATTATCGGAAACATGACAAATTTGGTGGTTCATAGCTCTGGCCGAACATTTGCCATGAGGGATGCCTTCAATAAAGTATTACAATATGCGAGCAAAAATGGACTCCCAGTAGGATTGAAGGAACAAATGTTGGCACATACACAACTGAAGTTTAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAGGACCTACCTAAAGCAATTAGGGCCGGTATTGCTCAGCATCTTTTCCACAACGTGATTGAAAATACATACTTATTTAAAGGAGTCTCAGGTGATTTTATATGCCAGATGGTATCAGATATGAAAGCAGAATACTACCCATCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCCGGATCGGTGGATGTGTTGATATACAAGAATGGATCTGAAAAGTTTTTGTTCAAACTAGAACCTGGAAGCATGGTAGGAGAAATAGGTGTGATGTTTAATATCCCGCAACCTTATACAGTGAGAAGTAGAAGACTCTCCCAGCTTATACGAATCGATCATCATCATTTCAAGCAGATGGCAAAACCATTTAATGAAGATGGGAAGACAGTCATCCACAATTTTACTCAGTTTTTGAAGGGACTAAGAGGCGGGGTGCTGGAAGAAGTACCATTCGTAACAGAATTTTTGAGTGACTTGCATGAAGAGGAACAGACACAAAACGAGGGCACACAAGATGAAGTTTCAGAGTATCATGAAGGAGAAACAGAAAATTCCAGTCCATTGTCAAGCCTAGTTCCCATTAGAGTCAAAATCCACGGACACCACCCCAATGGAAAAAATGAAATTGGAACAACACCAAAGCTCATTATTCTACCAGATTCAGTTGAAGATCTTTTCAGAGTAGCAGAGAACAAGTTTGGAAAAAGAGGGAGCAAAATTCTTATGACCGATGGCTCAGAAGTAGAAGATCTAAGCGCCTTAAGAGAGAATGACGAGTTATACATCCTCTAA 1854 0.4029 MIPSLVRRRSSGEVRKLASISNSLLPAFGTNLDEGYFNLKKYTIAPYDRRYRFWQTFLVALVVYSAWASPFELAFREMSIGSLLITDLFVDAFFAFDIILTFFVAYLDTSTYFLVDDHKEIAIRYVKHLCFPMDLASTLPFQQMYQLIAGKSHDRGEVFGFLNMLRLWRLRRVSELFSRLEKDIRVSYSLTRVCKLLCVTLFAVHFTGCVYFWLAYHHESPENTWIGKEVKDFKQRSVGSGYTYSMYWSIVTLTTVGYGDLHAENTTEKVFNIFYMLFNIGLTAYIIGNMTNLVVHSSGRTFAMRDAFNKVLQYASKNGLPVGLKEQMLAHTQLKFKTAELQQEEVLQDLPKAIRAGIAQHLFHNVIENTYLFKGVSGDFICQMVSDMKAEYYPSKVDIILQNEMPAYFYILVSGSVDVLIYKNGSEKFLFKLEPGSMVGEIGVMFNIPQPYTVRSRRLSQLIRIDHHHFKQMAKPFNEDGKTVIHNFTQFLKGLRGGVLEEVPFVTEFLSDLHEEEQTQNEGTQDEVSEYHEGETENSSPLSSLVPIRVKIHGHHPNGKNEIGTTPKLIILPDSVEDLFRVAENKFGKRGSKILMTDGSEVEDLSALRENDELYIL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04114 617 PANTHER POTASSIUM CHANNEL AKT1 17 493 IPR045319 GO:0005249|GO:0006813
Vifa2g04114 617 MobiDBLite consensus disorder prediction 515 534 - -
Vifa2g04114 617 Pfam KHA, dimerisation domain of potassium ion channel 549 616 IPR021789 -
Vifa2g04114 617 Pfam Cyclic nucleotide-binding domain 394 474 IPR000595 -
Vifa2g04114 617 Pfam Ion transport protein 52 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa2g04114 617 ProSiteProfiles KHA domain profile. 549 617 IPR021789 -
Vifa2g04114 617 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04114 617 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04114 617 PRINTS EAG/ELK/ERG potassium channel family signature 87 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04114 617 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04114 617 PRINTS EAG/ELK/ERG potassium channel family signature 98 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04114 617 ProSiteProfiles cAMP/cGMP binding motif profile. 372 491 IPR000595 -
Vifa2g04114 617 Gene3D Jelly Rolls 337 494 IPR014710 -
Vifa2g04114 617 FunFam Potassium channel KAT3 53 296 - -
Vifa2g04114 617 Gene3D - 52 295 - -
Vifa2g04114 617 SMART cnmp_10 372 489 IPR000595 -
Vifa2g04114 617 SUPERFAMILY cAMP-binding domain-like 300 491 IPR018490 -
Vifa2g04114 617 MobiDBLite consensus disorder prediction 515 544 - -
Vifa2g04114 617 CDD CAP_ED 372 473 IPR000595 -
Vifa2g04114 617 SUPERFAMILY Voltage-gated potassium channels 46 294 - -
Vifa2g04114 617 FunFam Potassium channel KAT2 360 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04114 Vifa-Chr2 1201730627 1201736265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04114 7 616 Ion Channels AT4G32650 58.909 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04114 K21867 - gmx:100794620 903.279