Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04113 ATGATTCCATCTCTGGTTAGAAGACGCTCAAGTGGTGAAGTAAGAAAGTTGGCCTCAATTTCTAACAGTCTCTTACCAGCATTTGGCACTAATCTTGATGAAGGTTACTTCAACCTTAAGAAATATACCATTGCGCCCTATGATCGAAGATATCGATTCTGGCAAACGTTCCTAGTGGCATTGGTGGTGTATTCTGCATGGGCATCTCCATTTGAGTTGGCTTTCAGAGAGATGTCAATCGGGTCGCTGTTAATAACTGATCTCTTTGTCGATGCTTTCTTTGCATTTGACATAATCCTAACTTTCTTCGTGGCCTACTTGGATACATCAACTTATTTCCTTGTTGATGACCATAAGGAGATTGCTATCAGGTACGTCAAGCATTTATGTTTTCCCATGGATCTAGCTTCAACTCTGCCATTTCAACAGATGTATCAACTTATAGCCGGCAAATCACACGATAGAGGAGAAGTCTTTGGTTTTCTTAACATGCTTAGACTTTGGCGATTGAGACGTGTTAGCGAGCTCTTCTCAAGGCTAGAGAAAGACATAAGGGTTAGCTACTCGTTAACAAGAGTCTGTAAACTTTTATGCGTTACGCTATTTGCAGTGCATTTCACAGGCTGCGTGTATTTTTGGTTGGCTTACCATCACGAATCACCCGAAAATACATGGATTGGGAAGGAGGTAAAGGATTTTAAGCAAAGGAGTGTGGGGTCAGGATACACTTACTCCATGTACTGGTCTATTGTAACCCTTACTACCGTTGGCTATGGAGATTTGCATGCAGAAAATACAACGGAGAAGGTTTTCAATATATTTTATATGTTGTTTAACATCGGCCTCACTGCATATATTATCGGAAACATGACAAATTTGGTGGTTCATAGCTCTGGCCGAACATTTGCCATGAGGGATGCCTTCAATAAAGTATTACAATATGCGAGCAAAAATGGACTCCCAGTAGGATTGAAGGAACAAATGTTGGCACATACACAACTGAAGTTTAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAGGACCTACCTAAAGCAATTAGGGCCGGTATTGCTCAGCATCTTTTCCACAACGTGATTGAAAATACATACTTATTTAAAGGAGTCTCAGATATGAAAGCAGAATACTACCCATCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCCGGATCGGTGGATGTGTTGATATACAAGAATGGATCTGAAAAGTTTTTGTTCAAACTAGAACCTGGAAGCATGGTAGGAGAAATAGGTGTGATGTTTAATATCCCGCAACCTTATACAGTGAGAAGTAGAAGACTCTCCCAGCTTATACGAATCGATCATCATCATTTCAAGCAGATGGCAAAACCATTTAATGAAGATGGGAAGACAGTCATCCACAATTTTACTCAGTTTTTGAAGGGACTAAGAGGCGGGGTGCTGGAAGAAGTACCATTCGTAACAGAATTTTTGAGTGACTTGCATGAAGAGGAACAGACACAAAACGAGGGCACACAAGATGAAGTTTCAGAGTATCATGAAGGAGAAACAGAAAATTCCAGTCCATTGTCAAGCCTAGTTCCCATTAGAGTCAAAATCCACGGACACCACCCCAATGGAAAAAATGAAATTGGAACAACACCAAAGCTCATTATTCTACCAGATTCAGTTGAAGATCTTTTCAGAGTAGCAGAGAACAAGTTTGGAAAAAGAGGGAGCAAAATTCTTATGACCGATGGCTCAGAAGTAGAAGATCTAAGCGCCTTAAGAGAGAATGACGAGTTATACATCCTCTAA 1827 0.4034 MIPSLVRRRSSGEVRKLASISNSLLPAFGTNLDEGYFNLKKYTIAPYDRRYRFWQTFLVALVVYSAWASPFELAFREMSIGSLLITDLFVDAFFAFDIILTFFVAYLDTSTYFLVDDHKEIAIRYVKHLCFPMDLASTLPFQQMYQLIAGKSHDRGEVFGFLNMLRLWRLRRVSELFSRLEKDIRVSYSLTRVCKLLCVTLFAVHFTGCVYFWLAYHHESPENTWIGKEVKDFKQRSVGSGYTYSMYWSIVTLTTVGYGDLHAENTTEKVFNIFYMLFNIGLTAYIIGNMTNLVVHSSGRTFAMRDAFNKVLQYASKNGLPVGLKEQMLAHTQLKFKTAELQQEEVLQDLPKAIRAGIAQHLFHNVIENTYLFKGVSDMKAEYYPSKVDIILQNEMPAYFYILVSGSVDVLIYKNGSEKFLFKLEPGSMVGEIGVMFNIPQPYTVRSRRLSQLIRIDHHHFKQMAKPFNEDGKTVIHNFTQFLKGLRGGVLEEVPFVTEFLSDLHEEEQTQNEGTQDEVSEYHEGETENSSPLSSLVPIRVKIHGHHPNGKNEIGTTPKLIILPDSVEDLFRVAENKFGKRGSKILMTDGSEVEDLSALRENDELYIL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04113 608 SMART cnmp_10 363 480 IPR000595 -
Vifa2g04113 608 Gene3D - 52 295 - -
Vifa2g04113 608 Gene3D Jelly Rolls 337 485 IPR014710 -
Vifa2g04113 608 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04113 608 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04113 608 PRINTS EAG/ELK/ERG potassium channel family signature 98 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04113 608 PRINTS EAG/ELK/ERG potassium channel family signature 87 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04113 608 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04113 608 FunFam Potassium channel KAT2 354 487 - -
Vifa2g04113 608 ProSiteProfiles cAMP/cGMP binding motif profile. 363 482 IPR000595 -
Vifa2g04113 608 Pfam KHA, dimerisation domain of potassium ion channel 540 607 IPR021789 -
Vifa2g04113 608 SUPERFAMILY cAMP-binding domain-like 300 482 IPR018490 -
Vifa2g04113 608 MobiDBLite consensus disorder prediction 506 525 - -
Vifa2g04113 608 CDD CAP_ED 376 464 IPR000595 -
Vifa2g04113 608 FunFam Potassium channel KAT3 53 296 - -
Vifa2g04113 608 Pfam Cyclic nucleotide-binding domain 385 465 IPR000595 -
Vifa2g04113 608 PANTHER POTASSIUM CHANNEL AKT1 17 484 IPR045319 GO:0005249|GO:0006813
Vifa2g04113 608 Pfam Ion transport protein 52 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa2g04113 608 ProSiteProfiles KHA domain profile. 540 608 IPR021789 -
Vifa2g04113 608 SUPERFAMILY Voltage-gated potassium channels 46 294 - -
Vifa2g04113 608 MobiDBLite consensus disorder prediction 506 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04113 Vifa-Chr2 1201730627 1201736265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04113 7 607 Ion Channels AT4G32650 58.748 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04113 K21867 - gmx:100794620 885.945