Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04104 ATGGATAATCAAGCGAATCAGAATCAAGTTCAACCACCACGTGATGAAGAAGAAGAAGACGAAGATCCTTCGAAAATGGAAGAAGAAGAGTTAATCGCAAAGGTTAACACACTCATGGATAAAATCACTTCCTCTCCCGATAACCCTAAACCCAACGTTCTTCATGCTCTTGCATCCATTCTTGAAACTCAAGAGACTCGATACATGGAAGATAGTAGTCATTCTTCGTCTACCAATGCGCGTGCTGCTCATAACATTGGACGTCTTGGTGGTATAATTCGGGAAAACGATGATTTCTTTGAGTTAATATCTTTGAAGTTTCTATCAGAATCGGGATACTCAACTGCTGTTCGAGCTGCTGCTGTCAGACTTATCTTGTGCTGTTCTCTGACTTGGATTTATCCTCATGTTTTTGAAGAACCGGTTCTCGAGAAGTTAAAAGATTGGGCTACTGATGATAGTACTAGGTCAGGGGCTGAGGAGCAAAACCTGAAACCTGATCTGGGGAGAAAGGAGGCGTCAGATTCTGAAATGTTGAAAGCATATTCTACTGGGCTCCTTGCCGTGTGTTTGGTCGGCGGAGGTCAAATAGTGGAAGATGTATTGACATCTGGCTTGTCAGCTAAGCTAATGCGTTATCTTCGTGTGCGTGTGCTGGGCGAGACAAGTGGCAGCCAGAAAGATATTAGTCATTTATCTGAAAACAAACATTCATCTGGGAATACTTCAGTAAGAGGTAGAGATGATGGTCGTGGAAGGTTTCGCCAGCTCCTGGAAATGAGTCATTTAGGTGATACAAGGAATAATGAAGAGGGATCTTTAGATGACCAAGGTCCTGAACAGGGTCAGGATAGAAGTGTCAGTGGACAGGCTTGCCAAGAAGATCTCTGGGTAGACGATGAACCACCTGATGGACTCAACAGAGGTGCTGATGTTGGTGAGGTGGATTCTGACGGGGAGGATAGATGGCGTTGTAGAGATATTCGTGATGGCAGGATAAAATATGGTGATCATGAAGACAATGGTAGGGATGAATCTGCAAGGCGGCGTACTAGCCGTGGATGGGGAAGATCAAGGGGGAAAGGAAGGGCCAACGAAGGGCCGGTAGAAAGTGAACCCATTTTGTCATCTGCTGGTTCTGCCAGTCGATTAGGACAGGGGCGGAGTGGTAGAGATAGGAGCTCTTTGAGGAACACTGACGTTAAACGGGTACCTGATTCTAAAAAGGCTCTTACCAGTACCGTTTCTGAAGCTTTGGTTTCCGGAAGAGAGGATAATGATGCTTGTTTCCAAGATTGCTGTATTGGTAGTAAAGATATCTCTGATCTTGTTCGAAAAGCAGTCCAAGCTGCCGAGGTTGAAGCTAGATCAGACAATGCCCCTGAAGAAGCTGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTTAGAGGAATACAAATCCACCAACAATGAAGAGGTAGCTTTTTTGGCTGCTTCTAGAGCTGCATCAACAGTTATTGATGCTGCATCTGCTGTTGAAGTTTCAAGGAAATCTGTCTGCATTGATACTGAGACAGAGAATGTTAGTGGCAGAGAAACAGAATCTAGTGAGGATGTTGAAGATTATTTCATCCCAGACATTCAAATACTTACACAATTGAGGGAAAAATATTGCATTCAGTGTCTTGCATTACTTGGAGAATATGTAGAAGTTCTTGGACCTGTATTGCACGAGAAGGGGGTTGATGTTTGTCTGGGACTTTTGCAGCAAAGTTCTAAACATCAGGATCCATCCAAGGTTGCTTTCCTGTTGCCAGATGTCATGAAGCTGATATGTGCTTTGGCTGCCCATAGGAAATTTGCTGCACTATTTGTGGACCGTGGAGGAATGCAAAAGCTACTTGCTGTACCTAGAATGGCTCAAACATTCTTTGGCCTTTCTTCTTGTCTATTCACTATTGGTTCCCTTCAGGGGATAATGGAGCGAGTTTGTGCTCTTCCTTCTGATGTTATTTATCACGTAGTTGAGTTGGCTCTCCAACTCATTGAGTGTAATCAAGATCTTGCCCGGAAGAATGCAGCTTTGTTTTTTTCTGCCGCATTTGTCTTCAGAGCAGTACTCGATGCTTTTGACTCACAGGATGGCTTACAGAAATTACTAGGCCTTCTCAATGATGCGGTTTCCATAAGATCAGGAGTAACTTCTGGACCCTTGGGCTCGTCTAACTCAGGATTACTTCGAAATGACAGAACATCATCTGCAGAAGTGCTGACATCATCTGAGAAGCAGGTAGCCTATCACACTTGTGTTGCTCTGCGGCAATATTTCAGAGCACACCTCCTATTATTAGTAGATTCTATTCGTCCAACCCCCAAAATCAATCGCAGTGTTCCTAGAAATATTCCAAGTACAAGGGCTGCTTACAAGCCACTTGATATTAGTAATGAGGCAATGGATACAGTATTCACACTATTACAAAAAGATCGGAAGCTAGGTACTGCATTTGTGAGAACAAGTTGGCGGGAAGTCGAAAAGTTCTTGGCATGTAACGGGCATATTACTATGTTGGAATTGTGTCAGGCCCCAACTGTGGAGCGATATCTACATGATTTGCTTCAGTATGCATTGGGGGTTTTGCAAATTGTTACATTGGTACCTAGCAGTCGAAAGATGATTGTAAATGCAACATTAAGCACCAACCGTTCTGGTATTTATGTAATTTTGGATGCAGCAAATATTAGCAATAGTCACGTGGACCCCGAGATAATTCAATCAGCATTAAATGTTTTAATCAACCTTGTTTGCCCCCCTCCTTCAATCAGCAATAAACCACCTGTAGTGTCACAAGGCCAGCAGTTTGCGTCTTCCCAAACCTCTAATGGTGCTCTCTCAGAGACTAGAGATAGATATGCCGACCGATCTGCTCAAGGCTCTAGCCATATTGATCCTAGGGAGAGGAATGGGGAGTCCAGTGCTATAGATCGTGGCAATGCTACAGCACTTGTTACACAATCTGTGAATAATACTCCCCAAACTCCCGCTCCCTCTGCAAGCTCAGGCTTGGTTGGTGATCGAAGAATAACTCTGGGTGCAGGAGCACGCTGTGCCGGCCTTGCTACACAGCTGGAACAAGGATATCATCAGGCAAGAGAGGCTGTCTGTTCTAGTAATGGTATAAAGGTTCTTATACAAATCATCTCTTCACGTGTATATTCATCTCCTGCTGCTCTGGACTGTCTCCGTGCTCTAGCTTGTCGAGTTCTGCTTGGATTAGCCAGAGATGACAATATTGCACATACATTAACAAAACTTCAGGTCGGGAAAAAAGTGTCCGACATAATTCGAGATTCAGGTGGCACAAGACCAGAACAGGGTAGGTGGCAAGCTGAACTATCCCAGGCTGCAATTGAGTTAATTGGGATTGTGGCTAATTTAGGACGTGCAAGCACATTAGTTGCTAGTGATGCAGCTACTCCTACATTAAGGCGCATTGAAAGAGCTGCTATAGCTGCCGCTACTCCTATTACTTACCCTTCAAGTGAACTCTTGCTCTTAATTCATGAACACTTACAGGCATCTGGATTGGGGCAAACTGCTTCTTTATTGCTTAAAGAGGCTCAGTTAACTCCTTTGTCATCATTACTTGCTCCATCTTCTCTAGCACAGCAACCCACAACACAAGAAGCTTCTTCAACACAGGTTCAGTGGCCTTCTGGTCGTACTCCTAGTGGCTTTCTCACCAGCAAATTAAAGTCTAATTCAAAGAATGAAGATACTTGTTTGAAAAGTGATGCCTTCTCCGCAAAGAAAAAGTCACTAACTTTCTCATCGTCTTTTGGTTCCCATACAAGACACCAAGTCATTGACTCTCGGCAGTCATCAGCCAGAATATTGTTACGTACTGGGAAAGACTCTTCAGAAACTTGTATAATAGAGAACCCATCTGAATCTTCAGTGAAACCTAACACTGAAACTGGACCTCAGCTTAAGACTCCAGTCACCTTGCCGTCCAAACGGAAGTTATCGGATTTAAAGGATATACCAATGTTATCATCATCTGGAAAGCGACTAAATGTTGGGGATCCGGGTCTTCGCTCTCCTATTTCCTCAAATGCAGTTCGTAAAAGCAGCCTGCATACTGATGCTATTGGGCTTTTCACACCAACTAGTAATATGAGGAGTCATCATGGCCGTTGTACAGCTGACAATGTGGATGAGAATCAGTACTGCATCTCTAGTCTAGCCCAGACAACACCATCCTCCCAAGTAATAAATGACGTCCAGCCCAACAACCTTGAGCGTGTGACACTAGATTCTCTGGTGGTTCAGTATCTGAAACATCAGCATCGCCAATGCCCAGCCCCCATTACCACCCTTCCTCCTATATCTCTTCTGCACCCACATGTTTGTCCTGAACCTAAACGAAGCCTTGATGCCCCCTCTAATGTGACTGCTCGCCTTGGTACCCGCGAATTTAAGTTTATGTATGGTGGAGTACATGGTAATCGCAGGGATCGTCAATTTGTTTTCAGTCGGTTTAGGCCATGGCGCACTTATCGGGACGATGCCGGTTCATTATTTACTTGCATTACATTTGTTGGAGACTCTTCTCATATTGCTGTAGGTAGCCATACTGGAGAACTCAAATTTTTTGATTCCAATAACAGTAACGTGGTAGAGAGTTTCACAGGTCACCAGTCTCCATTGACCCTGATTCAGTCTTATGTGTCTGGTGAGACCCAATTATTGCTTTCTTCATGCTCTCAAGATGTTAAGCTGTGGGATGCAACATCGATATTAGGTGGTCCCACCCGTTCATTTGAAGGGTGCAAGGCTGCAAGGTTTAGTAACTCTGGGAATACTTTTGCTGCCCTGTCATCAGAATCTACAGGACGGGAAATCCTTTTATATGATATTGAAAGTTACCAGTTAAAAGAGAAGTTGTCTGATACATCAACTATTTCTACAGGGCGGGGTCATGTTTATTCTTTAATCCACTTTAGCCCCGCCGATTCAATGCTGCTTTGGAATGGTGTCCTATGGGACCCGAGGGTGTCTACGCCTGTTCATCGCTTTGATCAGTTCACCGATTATGGAGGTGGAGGTTTTCATCCTGCTGGAAATGAGGTTATTATAAACTCTGAAGTATGGGATCTCCGAAAATTCAGACTTCTACGTAGTGTAGCTTCATTAGATCAGACATCAATAACATTCAATGCCCGTGGTGATGTTATGTATGCGATGTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAATGCATGCACGTCGTGTCAAGCACCCACTGTTTTCAGCTTTTCGCACAGTGGATGCAATAAATTATTCTGACATTGCTACTACCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACCGAGCCAACAGATTCATTTATTGGTTTGATTACCATGGATGATCAAGGCGAGATGTATTCATCAGCCAGATCGTATGAAATTGGTCGTCGGAGGCCAACTGATGACGATTCTGATCCTGATGATGCTGAAAGTGAGGAAGAAGATGAAGATGAGGACGATGATGATGAAGATCCTCTTTTAGGCCCTGGCTTTGGTGGGGAGAGCGACAGTGATGCTGATGACATGAGCAATGATGATGATAGTGTAAGCGATCCGGATGATGACGACGACGATGATGAAGAGGGAGGTTTTATAATGAATGATGTAGACTTTGATGGGGAAGCAGACATGTTAGATATGGTAAGCGATGGTGATGAGGACGATGATGACAGTCAAGGACTTTCCGGGAGCAGTGACGATTATGACTTTGGTTATTAA 5808 0.4404 MDNQANQNQVQPPRDEEEEDEDPSKMEEEELIAKVNTLMDKITSSPDNPKPNVLHALASILETQETRYMEDSSHSSSTNARAAHNIGRLGGIIRENDDFFELISLKFLSESGYSTAVRAAAVRLILCCSLTWIYPHVFEEPVLEKLKDWATDDSTRSGAEEQNLKPDLGRKEASDSEMLKAYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRVRVLGETSGSQKDISHLSENKHSSGNTSVRGRDDGRGRFRQLLEMSHLGDTRNNEEGSLDDQGPEQGQDRSVSGQACQEDLWVDDEPPDGLNRGADVGEVDSDGEDRWRCRDIRDGRIKYGDHEDNGRDESARRRTSRGWGRSRGKGRANEGPVESEPILSSAGSASRLGQGRSGRDRSSLRNTDVKRVPDSKKALTSTVSEALVSGREDNDACFQDCCIGSKDISDLVRKAVQAAEVEARSDNAPEEAVKAAGDAAADLVKTAALEEYKSTNNEEVAFLAASRAASTVIDAASAVEVSRKSVCIDTETENVSGRETESSEDVEDYFIPDIQILTQLREKYCIQCLALLGEYVEVLGPVLHEKGVDVCLGLLQQSSKHQDPSKVAFLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSDVIYHVVELALQLIECNQDLARKNAALFFSAAFVFRAVLDAFDSQDGLQKLLGLLNDAVSIRSGVTSGPLGSSNSGLLRNDRTSSAEVLTSSEKQVAYHTCVALRQYFRAHLLLLVDSIRPTPKINRSVPRNIPSTRAAYKPLDISNEAMDTVFTLLQKDRKLGTAFVRTSWREVEKFLACNGHITMLELCQAPTVERYLHDLLQYALGVLQIVTLVPSSRKMIVNATLSTNRSGIYVILDAANISNSHVDPEIIQSALNVLINLVCPPPSISNKPPVVSQGQQFASSQTSNGALSETRDRYADRSAQGSSHIDPRERNGESSAIDRGNATALVTQSVNNTPQTPAPSASSGLVGDRRITLGAGARCAGLATQLEQGYHQAREAVCSSNGIKVLIQIISSRVYSSPAALDCLRALACRVLLGLARDDNIAHTLTKLQVGKKVSDIIRDSGGTRPEQGRWQAELSQAAIELIGIVANLGRASTLVASDAATPTLRRIERAAIAAATPITYPSSELLLLIHEHLQASGLGQTASLLLKEAQLTPLSSLLAPSSLAQQPTTQEASSTQVQWPSGRTPSGFLTSKLKSNSKNEDTCLKSDAFSAKKKSLTFSSSFGSHTRHQVIDSRQSSARILLRTGKDSSETCIIENPSESSVKPNTETGPQLKTPVTLPSKRKLSDLKDIPMLSSSGKRLNVGDPGLRSPISSNAVRKSSLHTDAIGLFTPTSNMRSHHGRCTADNVDENQYCISSLAQTTPSSQVINDVQPNNLERVTLDSLVVQYLKHQHRQCPAPITTLPPISLLHPHVCPEPKRSLDAPSNVTARLGTREFKFMYGGVHGNRRDRQFVFSRFRPWRTYRDDAGSLFTCITFVGDSSHIAVGSHTGELKFFDSNNSNVVESFTGHQSPLTLIQSYVSGETQLLLSSCSQDVKLWDATSILGGPTRSFEGCKAARFSNSGNTFAALSSESTGREILLYDIESYQLKEKLSDTSTISTGRGHVYSLIHFSPADSMLLWNGVLWDPRVSTPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVASLDQTSITFNARGDVMYAMLRRNLEDVMSAMHARRVKHPLFSAFRTVDAINYSDIATTPVDRCVLDFATEPTDSFIGLITMDDQGEMYSSARSYEIGRRRPTDDDSDPDDAESEEEDEDEDDDDEDPLLGPGFGGESDSDADDMSNDDDSVSDPDDDDDDDEEGGFIMNDVDFDGEADMLDMVSDGDEDDDDSQGLSGSSDDYDFGY 1935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04104 1935 SMART WD40_4 1599 1637 IPR001680 GO:0005515
Vifa2g04104 1935 SMART WD40_4 1511 1551 IPR001680 GO:0005515
Vifa2g04104 1935 SMART WD40_4 1554 1594 IPR001680 GO:0005515
Vifa2g04104 1935 ProSiteProfiles LIS1 homology (LisH) motif profile. 1177 1209 IPR006594 GO:0005515
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 1312 1333 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 333 412 - -
Vifa2g04104 1935 PANTHER VPRBP PROTEIN-RELATED 23 1930 IPR033270 GO:0016567
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 241 274 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 1820 1935 - -
Vifa2g04104 1935 SMART Lish 1177 1209 IPR006594 GO:0005515
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 275 290 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 393 407 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 375 392 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 1218 1247 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 1868 1925 - -
Vifa2g04104 1935 SUPERFAMILY WD40 repeat-like 1522 1745 IPR036322 GO:0005515
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 1312 1331 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 943 990 - -
Vifa2g04104 1935 SUPERFAMILY ARM repeat 566 1142 IPR016024 -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 333 352 - -
Vifa2g04104 1935 FunFam DDB1-and CUL4-associated factor homolog 1 1509 1836 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 225 240 - -
Vifa2g04104 1935 Gene3D - 1512 1836 IPR015943 GO:0005515
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 943 964 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 1835 1857 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 301 319 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 225 319 - -
Vifa2g04104 1935 MobiDBLite consensus disorder prediction 965 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04104 Vifa-Chr2 1198930930 1198939190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04104 1538 1744 U-box Gene Family AT2G33340 23.767 6.94e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04104 K11789 - gmx:100796030 2729.51