Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04090 ATGCAATTCAAATCAACACAATCCTCATTTCGAGATCGCACACACGAATTCCACACCGTCGCAGAAAAATTGAAGAAATCACTATCATCAACCTCAAATGGAGCCACCACCAGCACTCATCCTCCTTCTTCCTCTTCTCCTCCCTCGTCCTCTTCCAGATCCGACGATCCCCGATCCGCCGTCGCAATTCAATCAGAGTTTAACAGAAGAGCTTCCAAGATTGGTTATGGAATTCATCAAACCTCTCAGAAACTTTCCAAGCTCGCAAAATTGGCGAAAAGGACTTCGGTTTTCGATGATCCGACTATGGAAATTCAAGAACTAACAAGTGTTATTAAACAAGATATTACCGCGCTTAATTCCGCGGTTGTGGATCTTCAATTGATCAGTAACTCTAGAAATGAGAGTGGAAATGTTTCTACTGATACAACTAGTCATTCCACTACGGTTGTGGATGATTTAAAGACGCGATTGATGAGCACCACGAAAGAGTTTAAAGATGTTCTCACCATGAGAACTGAGAACCTGAAAACGCATGAGAGTAGAAGACAATTGTTTTCGTCGAATGCTTCTAAGGATACTGCAAATCCTTTTATCCGTCAACGTCCTTTAGCTACAAAGTCTGCTGCTAGTAGTTCTAATGCTCCTGCACCACCTCCATGGGCTAGTGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCAACAACAACAGCAGCAACAACAGATAGTTCCATTGCAGGACACTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCACGAGCTCGGCAGCATCTTTAATCAACTAGCAACACTTGTCTCCCAGCAAGGAGAGATTGCCATCAGGATTGATGAGAACATGGATGATACGTTAACAAATGTAGAGGGAGCACAAGGGGCTTTATTGAAGTATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTCTTGATGTTTTTTCTTATGGTTTTCTTATTTTTTGTGGCGTAG 1026 0.425 MQFKSTQSSFRDRTHEFHTVAEKLKKSLSSTSNGATTSTHPPSSSSPPSSSSRSDDPRSAVAIQSEFNRRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLISNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKTHESRRQLFSSNASKDTANPFIRQRPLATKSAASSSNAPAPPPWASGKQVDGESQPLLQQQQQQQQIVPLQDTYMQSRAEALQNVESTIHELGSIFNQLATLVSQQGEIAIRIDENMDDTLTNVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04090 341 FunFam Syntaxin-32 like 61 304 - -
Vifa2g04090 341 MobiDBLite consensus disorder prediction 9 23 - -
Vifa2g04090 341 MobiDBLite consensus disorder prediction 182 196 - -
Vifa2g04090 341 Pfam SNARE domain 285 337 IPR000727 -
Vifa2g04090 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Vifa2g04090 341 MobiDBLite consensus disorder prediction 1 59 - -
Vifa2g04090 341 SUPERFAMILY t-snare proteins 65 304 IPR010989 GO:0016020|GO:0016192
Vifa2g04090 341 CDD SNARE_syntaxin5 252 325 - -
Vifa2g04090 341 MobiDBLite consensus disorder prediction 24 59 - -
Vifa2g04090 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Vifa2g04090 341 MobiDBLite consensus disorder prediction 205 219 - -
Vifa2g04090 341 SMART tSNARE_6 244 311 IPR000727 -
Vifa2g04090 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa2g04090 341 Gene3D - 62 304 - -
Vifa2g04090 341 PANTHER SYNTAXIN 63 329 IPR045242 -
Vifa2g04090 341 MobiDBLite consensus disorder prediction 179 198 - -
Vifa2g04090 341 MobiDBLite consensus disorder prediction 205 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04090 Vifa-Chr2 1196305790 1196310701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04090 1 341 SNARE and Associated Proteins AT3G24350 62.032 6.12e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04090 K08490 - mnt:21390779 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04090 2 1196305790 1196310701 Vifa2g04090 2 1196305790 1196310701 ECH