Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04082 ATGGGTGTGGATTTCTATAATATTTTGAAGGTTGAAAAAAATGCTACCGATGATGATTTGAAGAAAGCTTATAGAAAATTGGCTATGAAATGGCACCCTGATAAGAACCCTACCAATAAAAAAGAAGCTGAAGCCAATTTCAAACAAATTTCTGAAGCTTATGCGATATTGAGTGATCCTCAAAGAAGGATGCTATATGATCAGCTTGGGGAACAAGGGTTAAAAGATAAGCCGCCGCCGGGAAATGAGTCGGCGAATGGTTTTAATCGAACTGCGGAGGATATCTTTACGGAATTCTTTGGGAGTAGTCCTTTGAATTTTGGATCGTCTGGACCTGGAAGGTCGAAGAGATTCTCATCTGATGGTGGAGGAAGCGCTCCGTTTGGTGGATTCAGCGGAGATTTTAATTTTCGAACACACAGCGAAAGATCGCATATGCCAAAGAAACCGTCACCTGTGGAGACTAAATTGCTTTGTAGTTTGGAGGAGTTGTATTCTGGTTCTACTAGGAAAATGAAGATCTCAAGGACTGTAATGGATCCCAATTCTTACGGAAGGGAAATCAAAGAAACGGAGGTATTAAGCATTGAGGTAAAGCCGGGTTGGAAGAAAGGGACAAAGATTACATTCCCAGATAAAGGGAATCAGCAATTAAATCAACTACCAGCAGACCTTGTATTTGTGATTGATGAGAAGCCTCATGAAGTGTTCAAGAGAGATGGGAATGACCTTATTGTGAACCAGAGGATAACACTAGCAGAAGCCATTGGAGGAACATTAATAAATATAAAAACGCTCGACAAACGTATCTTACGCGTTCAAGTGAAAGACATTGTGAGTCCTGGTTATGAGCTTATTGTTTCTAATGAAGGAATGCCAATAACAAAGGAACCTGGTCATAGGGGTCATTTGAAGATCATATTTGAGGTTAAGTTCCCTAAAAAATTGACATCAGGCCAACGTGCTGCACTTAAGAGAGTTTTGGGAGGTTGA 993 0.4048 MGVDFYNILKVEKNATDDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYAILSDPQRRMLYDQLGEQGLKDKPPPGNESANGFNRTAEDIFTEFFGSSPLNFGSSGPGRSKRFSSDGGGSAPFGGFSGDFNFRTHSERSHMPKKPSPVETKLLCSLEELYSGSTRKMKISRTVMDPNSYGREIKETEVLSIEVKPGWKKGTKITFPDKGNQQLNQLPADLVFVIDEKPHEVFKRDGNDLIVNQRITLAEAIGGTLINIKTLDKRILRVQVKDIVSPGYELIVSNEGMPITKEPGHRGHLKIIFEVKFPKKLTSGQRAALKRVLGG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04082 330 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vifa2g04082 330 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vifa2g04082 330 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vifa2g04082 330 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vifa2g04082 330 CDD DnaJ 4 59 IPR001623 -
Vifa2g04082 330 Gene3D DnaJ domain 3 109 IPR036869 -
Vifa2g04082 330 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vifa2g04082 330 Gene3D - 233 329 - -
Vifa2g04082 330 SMART dnaj_3 3 62 IPR001623 -
Vifa2g04082 330 Pfam DnaJ C terminal domain 153 313 IPR002939 -
Vifa2g04082 330 FunFam Dnaj homolog subfamily b member 149 232 - -
Vifa2g04082 330 FunFam DNAJ heat shock family protein 233 328 - -
Vifa2g04082 330 CDD DnaJ_C 151 316 - -
Vifa2g04082 330 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vifa2g04082 330 Gene3D - 152 232 - -
Vifa2g04082 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 236 323 IPR008971 GO:0006457|GO:0051082
Vifa2g04082 330 Pfam DnaJ domain 4 67 IPR001623 -
Vifa2g04082 330 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 328 - -
Vifa2g04082 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 152 235 IPR008971 GO:0006457|GO:0051082
Vifa2g04082 330 SUPERFAMILY Chaperone J-domain 3 103 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04082 Vifa-Chr2 1193554266 1193555912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04082 6 74 C2H2 Transcription Factor Family AT1G74250 36.986 6.43e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04082 2 1193554266 1193555912 Vifa2g04082 2 1193554266 1193555912 ECH