Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04079 ATGGCAAATCCTACAACTCGTCATGTAATCATTGACATAACCGCAACAACAACAACAACAGCAAATTCAAATTCTGAAGCTTCTCCTCCTCCTTCTGTTGATGTTGTTTCTACTCAATCTTCAAATTCTAGATTAAGAAGAGGCGACGATAATTCATTAGGACGTGTTTCCCGGACTCCATTGAGTTCAGGCTTTTGTGTTTCTTTGGAATTTGTTTTTACTTTTACTCAGATTATTGCTTCTGTTATTGTTCTTACTTCCTCGAGAAATGAACATCCACGTGCTCCCTTGTTTGCTTGGATTGTTGGTTATGCTTCTGGATGTGTTGTTTCGCTTCCTTTGTTGTTGTGGAGATATTTTGCTAGGGGAGATTCCGACTCTCGAACCTCCACCACGGTTGATGATCCTTCCGGGATTCTTCTTTCGAATTCGAGTACAATACTTGGGGAAGAAGATGTTGTTCCTATTTCATCCAATGTTTCATCCAATCAAGCTTCGTCGGTATTCACCAATATGAGAACCAAGATACTTGTGGAATACATCAAAATCGTCCTAGATTTATTTTTTGCATCATGGTTTATTGTTGGAATCATATGGATATTTGGAGGGCATTCATCCGCTAATGAAGCTCCAAACTTATACCGGTTATGTGTAGTGTTTATTACTTTTAGCTGCATCGGTTACGCATTGCCCTTCATTCTATGCTTAACAATCTGCTGCTGTCTTCCTTGTATAATTTCCACTCTTGGGGTCAACGAAGATCTCGTACAAACCAGAGGTGCAACCTCTGAGTGCATTGATGCTTTACCAACTCACAAATTCAAATTGAATAAAAGCAAAAGTATAGACGAAAACACTCCGGCTGTTATTGAAGGTGGAGTTGTTTCTGGAGGAACCGAAAAGGAACGCGTGATCTCCGGAGAAGATGCAGTTTGTTGCATATGCATAGCGAACTACGAAAACAACGATGATTTGAGAGAATTGCCTTGTTCACATCTTTTCCACAAAGATTGCGTAGACAGGTGGTTAAAGATAAATGCATTATGCCCCCTTTGCAAGAGGCAAGTTGGCGGGAATGAAACAGAACCAGTCATCGAGGAAAATGCCAGCCAACAAAGGGGCGAGACCGGGTTTGAGAATAGTCCTGCCAATACCTTGTCATAA 1164 0.4089 MANPTTRHVIIDITATTTTTANSNSEASPPPSVDVVSTQSSNSRLRRGDDNSLGRVSRTPLSSGFCVSLEFVFTFTQIIASVIVLTSSRNEHPRAPLFAWIVGYASGCVVSLPLLLWRYFARGDSDSRTSTTVDDPSGILLSNSSTILGEEDVVPISSNVSSNQASSVFTNMRTKILVEYIKIVLDLFFASWFIVGIIWIFGGHSSANEAPNLYRLCVVFITFSCIGYALPFILCLTICCCLPCIISTLGVNEDLVQTRGATSECIDALPTHKFKLNKSKSIDENTPAVIEGGVVSGGTEKERVISGEDAVCCICIANYENNDDLRELPCSHLFHKDCVDRWLKINALCPLCKRQVGGNETEPVIEENASQQRGETGFENSPANTLS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04079 387 SMART ring_2 312 352 IPR001841 -
Vifa2g04079 387 Pfam Ring finger domain 312 353 IPR001841 -
Vifa2g04079 387 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Vifa2g04079 387 MobiDBLite consensus disorder prediction 19 54 - -
Vifa2g04079 387 FunFam E3 ubiquitin-protein ligase 295 362 - -
Vifa2g04079 387 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 356 - -
Vifa2g04079 387 MobiDBLite consensus disorder prediction 19 47 - -
Vifa2g04079 387 SUPERFAMILY RING/U-box 304 356 - -
Vifa2g04079 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 361 IPR013083 -
Vifa2g04079 387 MobiDBLite consensus disorder prediction 365 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04079 Vifa-Chr2 1193498974 1193501153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04079 13 357 C3H Transcription Factor Family AT1G80400 46.045 1.32e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04079 - - gmx:100775815 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04079 2 1193498974 1193501153 Vifa2g04079 2 1193498974 1193501153 ECH