Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04071 ATGGCGCTGCTGCTGACAATGGTTCACTCTCACAACAACTACACTGCTGGGACCCAACACGATCTCAAGCCACTCCTCCGTGATTTTCTCGGCATGAAACCATCACCATCACCATCACCCTCCTCCGCCGCTCCTCCTCCTGCCCCTTTCTCCTCCACCTCTGATACCGCTTCTGAAAAGCAGGTATCAAATCATCTTGAGGGAGTTCCATACTATGGCCCAAGAACTGATTTTTCTGCCACTGAGATTAGCAACAGACTAGTGGGGAGCAAGAGAAGTAATTCTGATTCCTCTTTTATTGGTTCCTCCTCTAGAGATGCCTTCCAAATGGGCCCTGATTCCTTTCAAAATTCACATTTGATGAAGGTTCTCCGACATGTGTCTGGAGGAGAGAGATCTAGAAGGCCTAATGACGATGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCCACCAGCTCTATGATTGACGCAAATAAATGGGATCGGTCTATTCTCATGAATGCCAGCCCTTCCATGCAGCATCTTCCACGTGGAGGACAGATGACTCCTTTTGCACACCAATTAGCTTCAAACAAGATTAGAGATACCAATACCGGACCTTCCTTTATCTCTCAGTTTGCTGCTGATGAAGGATCGAGAACTGGAATCAAGGGCCCCGGAATTTTAAGTTCCATAAACACATCTGCTACCGCTAGTGATAAAGTTTCATCTGCCGTGCTGCTTGGTGGAAGCAGGCCAAAGCAGTTAACTAATGTTATAGAATCATCCACACCTCCAAGTCAACATGGGCTAACACCTGCCAGCCGCCAGATGACTATCTTTTACGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCCACATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGAGGATCTTGGTCCACAGCATTCTCGCCGAAATCTGCTGCAAAGCTGGTCAATGATAGTAATTTGCATAGTGGAGAAAATGAAGCAGGATTAGTGAGCAATGTACCATTCCCACAAGAGCTTCATGGGAAGTTGCCTGTAACTGGCAGTTCTAGTCGTGCCGTGGGACCTGGTGATCGTGTATCTACCCCAACCAGGGCACACCAAGGAAGCATATTTGCTAAAGATACAAGAAATTCGAGTCAAGCAGCAGACCCCACTTCCGAAGATAAAAGAGCACTGTGA 1215 0.4667 MALLLTMVHSHNNYTAGTQHDLKPLLRDFLGMKPSPSPSPSSAAPPPAPFSSTSDTASEKQVSNHLEGVPYYGPRTDFSATEISNRLVGSKRSNSDSSFIGSSSRDAFQMGPDSFQNSHLMKVLRHVSGGERSRRPNDDEVLLGMQSMKPSSSSQIFHPPTSSMIDANKWDRSILMNASPSMQHLPRGGQMTPFAHQLASNKIRDTNTGPSFISQFAADEGSRTGIKGPGILSSINTSATASDKVSSAVLLGGSRPKQLTNVIESSTPPSQHGLTPASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAAKLVNDSNLHSGENEAGLVSNVPFPQELHGKLPVTGSSSRAVGPGDRVSTPTRAHQGSIFAKDTRNSSQAADPTSEDKRAL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04071 404 MobiDBLite consensus disorder prediction 374 397 - -
Vifa2g04071 404 Pfam tify domain 276 308 IPR010399 -
Vifa2g04071 404 MobiDBLite consensus disorder prediction 28 75 - -
Vifa2g04071 404 MobiDBLite consensus disorder prediction 352 404 - -
Vifa2g04071 404 MobiDBLite consensus disorder prediction 48 63 - -
Vifa2g04071 404 SMART tify_2 274 309 IPR010399 -
Vifa2g04071 404 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 79 349 IPR040390 -
Vifa2g04071 404 ProSiteProfiles Tify domain profile. 274 309 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04071 Vifa-Chr2 1192246319 1192249316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04071 35 307 Tify Gene Family AT4G32570 38.909 2.45e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa2g04071 tify 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04071 - - gmx:100819293 562.377