Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04070 ATGGCGCTGCTGCTGACAATGGTTCACTCTCACAACAACTACACTGCTGGGACCCAACACGATCTCAAGCCACTCCTCCGTGATTTTCTCGGCATGAAACCATCACCATCACCATCACCCTCCTCCGCCGCTCCTCCTCCTGCCCCTTTCTCCTCCACCTCTGATACCGCTTCTGAAAAGCAGGTATCAAATCATCTTGAGGGAGTTCCATACTATGGCCCAAGAACTGATTTTTCTGCCACTGAGATTAGCAACAGACTAGTGGGGAGCAAGAGAAGTAATTCTGATTCCTCTTTTATTGGTTCCTCCTCTAGAGATGCCTTCCAAATGGGCCCTGATTCCTTTCAAAATTCACATTTGATGAAGGTTCTCCGACATGTGTCTGGAGGAGAGAGATCTAGAAGGCCTAATGACGATGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCCACCAGCTCTATGATTGACGCAAATAAATGGGATCGGTCTATTCTCATGAATGCCAGCCCTTCCATGCAGCATCTTCCACGTGGAGGACAGATGACTCCTTTTGCACACCAATTAGCTTCAAACAAGATTAGAGATACCAATACCGGACCTTCCTTTATCTCTCAGTTTGCTGCTGATGAAGGATCGAGAACTGGAATCAAGGGCCCCGGAATTTTAAGTTCCATAAACACATCTGCTACCGCTAGTGATAAAGTTTCATCTGCCGTGCTGCTTGGTGGAAGCAGGCCAAAGCAGTTAACTAATGTTATAGAATCATCCACACCTCCAAGCAGTCAACATGGGCTAACACCTGCCAGCCGCCAGATGACTATCTTTTACGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCCACATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGAGGATCTTGGTCCACAGCATTCTCGCCGAAATCTGCTGCAAAGCTGGTCAATGATAGTAATTTGCATAGTGGAGAAAATGAAGCAGGATTAGTGAGCAATGTACCATTCCCACAAGAGCTTCATGGGAAGTTGCCTGTAACTGGCAGTTCTAGTCGTGCCGTGGGACCTGGTGATCGTGTATCTACCCCAACCAGGGCACACCAAGGAAGCATATTTGCTAAAGATACAAGAAATTCGAGTCAAGCAGCAGACCCCACTTCCGAAGATAAAAGAGCACTGTGA 1218 0.4672 MALLLTMVHSHNNYTAGTQHDLKPLLRDFLGMKPSPSPSPSSAAPPPAPFSSTSDTASEKQVSNHLEGVPYYGPRTDFSATEISNRLVGSKRSNSDSSFIGSSSRDAFQMGPDSFQNSHLMKVLRHVSGGERSRRPNDDEVLLGMQSMKPSSSSQIFHPPTSSMIDANKWDRSILMNASPSMQHLPRGGQMTPFAHQLASNKIRDTNTGPSFISQFAADEGSRTGIKGPGILSSINTSATASDKVSSAVLLGGSRPKQLTNVIESSTPPSSQHGLTPASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAAKLVNDSNLHSGENEAGLVSNVPFPQELHGKLPVTGSSSRAVGPGDRVSTPTRAHQGSIFAKDTRNSSQAADPTSEDKRAL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04070 405 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 79 350 IPR040390 -
Vifa2g04070 405 MobiDBLite consensus disorder prediction 353 405 - -
Vifa2g04070 405 ProSiteProfiles Tify domain profile. 275 310 IPR010399 -
Vifa2g04070 405 Pfam tify domain 277 309 IPR010399 -
Vifa2g04070 405 SMART tify_2 275 310 IPR010399 -
Vifa2g04070 405 MobiDBLite consensus disorder prediction 28 75 - -
Vifa2g04070 405 MobiDBLite consensus disorder prediction 48 63 - -
Vifa2g04070 405 MobiDBLite consensus disorder prediction 375 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04070 Vifa-Chr2 1192246319 1192249316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04070 35 308 Tify Gene Family AT4G32570 37.410 2.37e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa2g04070 tify 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04070 - - gmx:100819293 568.54