Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04064 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTATCTTGTTAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCCGAGGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCTCCTGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCCAGGACTAATGAGAAGCACTCTGAAGTTGCTGCATCTTATATAGAGACTCAATTAGTTAAGGCAAGGGAACAACAACAGCAGCAGCAACCTCAACCGCAGCAGTTGCAACATCAGCAGCAACAACAGATGCAGATGCAACAGCTTATGTTGCAGAGACATGCTCAGCAGCAGCAGCAGCAGCAACAACAGCAACATCAGCAGCAGCAGCAACAACAGCCACAATCGCAGCAGCAGCAGCCGCAACCACAACAACAACAAAGTAGGGACAGGGCCCATCTCTTAAATGGTAGTGCAAATGGGTTAGGTGGAAACCCGGGAACTGCAAATGCAATAGCAACAAAGATGTACGAGGAAAGGTTAAAAGTTCCCCTTCAGAGAGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCGTCGATATTGAAGTCAGCCGCAAATTCTGGTCAACCTTCAGGGCACGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACAACGGATATGAAGAGTGATATAAATTCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCTTTGTTAGGAATTTCTGGATCGAATCAAGGAAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCATCTACGTTCGGGTCTACTCCAGCAACAAAAGCCTTTCATGCAATCTCCTCAGCCTTTTCATCAACTACAAATGTTGACACCGCAACATCAGCAACAACTTATGCTTGCACAACAGAATTTGACATCACCATCTGTAAGTGAAGAAAGTAGAAGGCTGAGAATGCTACTGAATAATAGGAATATGGGTCTAAATAAGGACGGTCTTTCGAACCCTGGGGCTGATGTGTTGTCGAATGTTGGATCACCTCTTCATGGTGGTGGCCCTCCATTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGCTACAGCAGCAGCAGCATCAACAACAGAGCATCAGTGCACAGCAGCAGCAACTTCAACAGCATACTCTTTCAAATCAGCAGTCTCAGACTTCAAATCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGGGGTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTACAAAAAACCAGATTGGAAGAAAGAGAAAGCAGGCTGTATCTTCTTCAGGTCCTGCGAATAGTTCAGGAACAGCAAATACAGCGGGTCCTTCACCAAGTTCAGCACCCTCAACACCTTCAACTCATACTCCTGGAGATGCTATGTCAATGCCTGCTTTGCCTCATAATGGCAATTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGCACCGGGACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTTGATCGCTTTGTAGATGATGGATCTCTAGATGAAAATGTAGAGTCTTTCTTATCGCAGGATGATACAGACCCTAGAGACCATGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGCGCTAGCTCAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGCGGTGGACACGACAAAAAGGCTGTTATATGGTATACTGATTCTCTAAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATAACTGACGTCCGTTTCAGTCCAACCATGCCGCGTCTAGCAACATCTTCCTTTGACAAAACTGTCAGGGTTTGGGACGTTGACAATCCTGGGTATTCACTTCGCACATTTACGGGACATTCCACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTTATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGTATAAACAACGGCAGTTGTGTTAGAGTCTCTAAGGGTGGTACTACGCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCCGAGAACATTGTGTCTATACTTGACGTGGAGACACAGGCCTGCCGATATTCATTAAAGGGTCATACAAAGACTATAGATTCTGTAAGTTGGGATCCATCTGGTGAGTTGCTGGCATCAGTGAGTGAGGACTCAGTTAGGATTTGGACTCTTGGAACAGGAAATGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCACTCATGTGTTTTCCATCCAACATATCCTTCACTGCTCGTCATTGGCTGTTATCAGTCAATGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACATTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCACGACAAGTTCATCAAGCTCTGGAAGTAA 2685 0.4466 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLVKAREQQQQQQPQPQQLQHQQQQQMQMQQLMLQRHAQQQQQQQQQQHQQQQQQQPQSQQQQPQPQQQQSRDRAHLLNGSANGLGGNPGTANAIATKMYEERLKVPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAANSGQPSGHVLHGAAGGMSPQVQARSQQLPGSTTDMKSDINSVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEHLRSGLLQQQKPFMQSPQPFHQLQMLTPQHQQQLMLAQQNLTSPSVSEESRRLRMLLNNRNMGLNKDGLSNPGADVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQHQQQSISAQQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVTKNQIGRKRKQAVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAMSMPALPHNGNSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVDDGSLDENVESFLSQDDTDPRDHVGRCMDVSKGFTFSDVNSVRASSSKVACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKATLEEHSSLITDVRFSPTMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVSWDPSGELLASVSEDSVRIWTLGTGNEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSMELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04064 894 MobiDBLite consensus disorder prediction 121 154 - -
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 777 809 - -
Vifa2g04064 894 MobiDBLite consensus disorder prediction 524 551 - -
Vifa2g04064 894 FunFam Transcriptional corepressor LEUNIG 738 894 - -
Vifa2g04064 894 MobiDBLite consensus disorder prediction 404 445 - -
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Vifa2g04064 894 MobiDBLite consensus disorder prediction 456 516 - -
Vifa2g04064 894 SUPERFAMILY WD40 repeat-like 608 894 IPR036322 GO:0005515
Vifa2g04064 894 Gene3D - 740 894 IPR015943 GO:0005515
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515
Vifa2g04064 894 Pfam WD domain, G-beta repeat 857 894 IPR001680 GO:0005515
Vifa2g04064 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515
Vifa2g04064 894 Pfam WD domain, G-beta repeat 611 641 IPR001680 GO:0005515
Vifa2g04064 894 Pfam WD domain, G-beta repeat 773 807 IPR001680 GO:0005515
Vifa2g04064 894 Pfam WD domain, G-beta repeat 649 684 IPR001680 GO:0005515
Vifa2g04064 894 Coils Coil 115 136 - -
Vifa2g04064 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 817 IPR001680 GO:0005515
Vifa2g04064 894 SMART Lish 8 40 IPR006594 GO:0005515
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 651 IPR001680 GO:0005515
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Vifa2g04064 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vifa2g04064 894 Pfam LisH 10 36 IPR006594 GO:0005515
Vifa2g04064 894 Gene3D - 588 739 IPR015943 GO:0005515
Vifa2g04064 894 MobiDBLite consensus disorder prediction 365 551 - -
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515
Vifa2g04064 894 SMART WD40_4 814 853 IPR001680 GO:0005515
Vifa2g04064 894 SMART WD40_4 603 642 IPR001680 GO:0005515
Vifa2g04064 894 SMART WD40_4 645 684 IPR001680 GO:0005515
Vifa2g04064 894 SMART WD40_4 688 728 IPR001680 GO:0005515
Vifa2g04064 894 SMART WD40_4 855 894 IPR001680 GO:0005515
Vifa2g04064 894 SMART WD40_4 770 808 IPR001680 GO:0005515
Vifa2g04064 894 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 894 - -
Vifa2g04064 894 CDD WD40 610 894 - -
Vifa2g04064 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04064 Vifa-Chr2 1191365622 1191373140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04064 689 893 Miscellaneous Gene Families AT5G08390 24.286 2.25e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa2g04064 WD40 0.003 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04064 - - gmx:100816263 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04064 2 1191365622 1191373140 Vifa2g04064 2 1191365622 1191373140 ECH
Vifa3g00369 3 49173513 49189635 Vifa2g04064 2 1191365622 1191373140 PCT