Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04062 ATGGAAGAAACTGAAGGTGTGAATTGTTGTAGTGAAGGTAGAAGCTCTAGTGAGAGTCGACCTCCTAATCCTAATCCATCTATTGCTTCTGCGTATCGGAAATGCAAACGCAATGATCCTGTTGTTTTGCCATGCAGAAACTCCCTTGTTCGTCACGCTTCTCTTCAAACGAAAATGAAGTTGTCTGATGTATCTGCTGAGGATGTTACTGGAGATTTCCTTCCAAAGCTTCGTTCTGGAGGATACGCTGATGTTGGGTTCCGGTCAAGTATGGAGGATGTGTATGTCTGTGTTGACCACTTTATGCAGGATCATGGGCTCAACAAGCATATAGGTGGACCAAGTGCTTTCTATGGGGTGTTTGATGGACATGGCGGAAAGCACGCCGCTGACTTTGCTTGCAACCATTTGCCGAAGTTCATTCTCGAGGATACAAATTTCCCAGTGGATATTGAAAGGATAGTTGCTTCGGCCTTTCTGCAAACAGACAATGCATTTGCAGAAGCTTGCTCTCTGGATGCTGCCCTTGCGTCTGGGACCACTGCATTGGCTACGCTTGTTATAGGAAGGTTTCTGGTGGTTGCAAATGCTGGAGATTGTCGAGCAGTGTTGTGCCGCAGTGGAAAAGCGATTGAAATGTCAAGAGATCACAAACCAGTTTGCATTAAAGAGAAGAGGCGTATCGAGGCATCTGGCGGGTATGTCTATGATGGATATCTTAACGGACAACTTAGTGTCACTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAAGGCAAAGATGGCGGTCCACTCAGTGCAGAGCCTGAACTCATGACGACAAAACTTACTGCTGAGGACGAATTTCTCATCATAGGCTGTGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCTCGGCGTAGGCTTCAGGACCATAACGACCCAGCCGTGTGTAGTAAGGATCTGGTTGATGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGTTTCCAGCAACAGCCTCCACCAAATTTGGTAGCACCGCGGGCCAGAGTGCACAGGAGCTTCTCTGCTGAAAGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGTTTGGGAAAATGA 1134 0.463 MEETEGVNCCSEGRSSSESRPPNPNPSIASAYRKCKRNDPVVLPCRNSLVRHASLQTKMKLSDVSAEDVTGDFLPKLRSGGYADVGFRSSMEDVYVCVDHFMQDHGLNKHIGGPSAFYGVFDGHGGKHAADFACNHLPKFILEDTNFPVDIERIVASAFLQTDNAFAEACSLDAALASGTTALATLVIGRFLVVANAGDCRAVLCRSGKAIEMSRDHKPVCIKEKRRIEASGGYVYDGYLNGQLSVTRAIGDWHMEGMKGKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQDHNDPAVCSKDLVDEALKRKSGDNLAAVVVCFQQQPPPNLVAPRARVHRSFSAESLKELQSFLDSLGK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04062 377 ProSiteProfiles PPM-type phosphatase domain profile. 78 341 IPR001932 -
Vifa2g04062 377 PANTHER PROTEIN PHOSPHATASE 2C 53 339 IPR015655 GO:0004722|GO:0006470
Vifa2g04062 377 SUPERFAMILY PP2C-like 72 343 IPR036457 -
Vifa2g04062 377 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Vifa2g04062 377 Gene3D - 60 345 IPR036457 -
Vifa2g04062 377 FunFam Probable protein phosphatase 2C 22 61 344 - -
Vifa2g04062 377 MobiDBLite consensus disorder prediction 1 27 - -
Vifa2g04062 377 MobiDBLite consensus disorder prediction 9 26 - -
Vifa2g04062 377 Pfam Protein phosphatase 2C 86 333 IPR001932 -
Vifa2g04062 377 SMART PP2C_4 68 339 IPR001932 -
Vifa2g04062 377 CDD PP2Cc 78 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04062 Vifa-Chr2 1190774481 1190776937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04062 1 376 PP2C-type Phosphatase Gene Family AT2G25620 65.561 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04062 K14803 - gmx:100804558 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04062 2 1190774481 1190776937 Vifa2g04062 2 1190774481 1190776937 ECH
Vifa2g04062 2 1190774481 1190776937 Vifa1g01286 1 206809271 206810926 ECH
Vifa2g04062 2 1190774481 1190776937 Vifa1g01286 1 206809271 206810926 PCT