Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04054 ATGGGGGCACCGTTCGAGGGAATCATTCAAGATGTTAAAGGAAGAGTTAAATGCTATAAACAAGATTGGGTCTGTGCAATCTGTTCTGGTGTTAGCATATTGGCTCCAACTTTCTACATATTCTTTGCTTCTGCACTTCCTGTTATTGCATTTGGAGAGCAACTTAGTAGGGATACAAATGGAAGCTTGAGCACAGTCGAAACATTAGCATCTACTGCTATTTGTGGAATTATCCACTCGATTATAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGCGGAACCGACTGTTATAATGTATACTTATCTCTACAATTTCTGCAAAAATACACCTGATTTGGGTGCTGAGCTCTTTCTAGCTTGGGCTGGTTGGGTTTGTTTTTGGACGGCGTTCATGTTAATTTTGCTTGCAATTTTTAATGCTTGCAATATTATCACTAGATTTACAAGAATTGCAGGGGAGTTATTTGGCATGCTTATCACTGTTCTTTTCTTTCAAGAGGCTATAAAGGGACTGGTAGGCGAGTTCAGCAATCCCAAAGTTGAAGAACCTTCCTCGGAGCAAATTCAATGGCAGTATACAAATGGATTACTTGCAGTCATTTTTTCTCTAGGACTAATCGTCTCCGCACTTAAAAGCAGAAGAGCAAGAACATGGCGATATGGAACAAGGAAACTACGAGGCTTTATTGCAGATTATGGGGTTCCAATGATGGTTGTGTTGTGGACTGCAGTATCTTATATAAAGCCAAGCACTGTTCCACATGATGTTCCTAGAAGGCTGTTTTGTCCACTTCCCTGGGAACCCGCGTCTCTTTATCACTGGACAGTAGCGAAGGATATGTGGAAGTGTGGCTTCTAA 861 0.4123 MGAPFEGIIQDVKGRVKCYKQDWVCAICSGVSILAPTFYIFFASALPVIAFGEQLSRDTNGSLSTVETLASTAICGIIHSIIGGQPLLILGVAEPTVIMYTYLYNFCKNTPDLGAELFLAWAGWVCFWTAFMLILLAIFNACNIITRFTRIAGELFGMLITVLFFQEAIKGLVGEFSNPKVEEPSSEQIQWQYTNGLLAVIFSLGLIVSALKSRRARTWRYGTRKLRGFIADYGVPMMVVLWTAVSYIKPSTVPHDVPRRLFCPLPWEPASLYHWTVAKDMWKCGF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04054 286 Pfam HCO3- transporter family 4 184 IPR011531 GO:0006820|GO:0016020
Vifa2g04054 286 Gene3D Helical hairpin bin 15 57 - -
Vifa2g04054 286 PANTHER ANION EXCHANGE PROTEIN 2 283 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vifa2g04054 286 FunFam probable boron transporter 2 15 57 - -
Vifa2g04054 286 SUPERFAMILY MFS general substrate transporter 22 218 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04054 Vifa-Chr2 1188589727 1188591310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04054 2 284 Antiporters AT5G25430 69.123 7.09e-143 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04054 K24194 - gmx:100787412 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04054 2 1188589727 1188591310 Vifa2g04054 2 1188589727 1188591310 ECH
Vifa2g04054 2 1188589727 1188591310 Vifa3g04519 3 1294442729 1294446665 ECH
Vifa3g04519 3 1294442729 1294446665 Vifa2g04054 2 1188589727 1188591310 PCT