Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04052 ATGAAAATATTGTACAAAAGCGTCGACAATGCCTCATTTCGTGAGCGAAAAATCATGAACGTTATAGAAGATGATACTCATTATAACAATATTTTCGACGACGGCGGCAGCCAATACAGCCTCACCGGTTTTGCCCTTCCTCCTCTCGGCGGACTTGGCCCCCTAAAACCTAAACTCCGCCGCTTCATTATCTCCCCTAATAACTATTATTACAGACGGTGGCAATCGTTTTTGGCGGCGTTGGTTTTTTACTCTGCATGGGTTTCACCGTTCGAATTAGGGTTCTTGAATGAACCTTCGATGTTTCTTTCTATAGCTGATAATGTTGTGAATGGTTTATTTTTCGTTGATATTGGATTAACCTTCTTTGTTGCTTACCATGACAAGTCTACCTATTTGTTTGAGGATAGATTCGGGCGAATTGCGTGTAGATATCTCAGATCATGGTTCCTATTGGATGTAGTTTCTTCCATTCCTTATGAGGCTGTTCGCGAAATCATTCATCAAAATGTCAAAACTTATGGCTACTTCAGTTTGCTTCGCCTCTGGCGTCTCCGTAGAGTCGGTTCCATGTTTGCAAGATTAGAGAAAGACAGACATTATAACTACTTCTGGCTGCGGTGTGCAAAGCTTGCATGTGTTACTTTATTTGTAACACATTTTGCTGCCTGCTTTTACTTCTTGATTGCGGATACTTATGTTAAAGACCGAAGCACAACATGGCTTGCGCTTATTCCTGATGTGGATAACCAGAGTACCATGGCTCTATACATAATATCATTATACTGGTCCATATTCACACTTTCATCGGTTGGTTATGGTGATGTGCATCCTGTAAATAAATGGGAGATGTTATATTGCTTTGTGTATTGCCTCGTTAATGTTGGATTTGGCTCATACCTCATTGGAAACATGACAAATTTAGTTGTTCACTCCACAAGAAGAACTATGAAATATAGGGACACAGTGCAAGCTGCCACAAAATTTGCCCACCGGAATAGAGTACCTGTCCGCTTGGAAGAACAGATGCTTTCTCATTTGCTTATGAAGTACAAAACTGATTTAGAAGGGGTACAGCAACAAGAGATTATTGATTCCCTTCCAAAAGCTATTCGATCTAGTATCTCGTATTGCTTATTCTATAGACTGATGGACGGAGTATACTTGTTTGATGGAGTGTCAAAAGACCTAATTTTTCAATTGGTCACGGAGATGAAGGCGGAGTATATTCCTCCAAAGCAAGACGTGATTATGGAAAATGAAGCACCAGCAGACTTTTATCTCTTTGTCACCGGTGGTGCAGAACTTATCAAACTTGAGAATGGAGTAGAAAATGTTGTTGGCGAGGTAAATGCAGGAGAGTTAGTTGGCGAAATAGGAGTTCTATGTTACAGGCCGCATCCATATACTGCCCGGGCTAAACGATTGAGCCAAGTTTTGCGCTTAAGTCGTACTGTGTTTCTAAATCTTATTAATTCAAGTGTTGGAGATGGGACAGTAATCATGAACAACTTTCTCAATCATTTGCAAGCTTCCACCATTCCCGGGATGGATGTTATTTTCGTAGAAACACAGGCCATGTTGGCACGTGGTAAAACGGATCTGCCTATTGGCACATACTTTGCAGCAATCAGAAATGACAATAAAATGTTAGAGTTGTTGCTGAGGAATGGCTCTGATCTAACTGAAGCAGACAGGAATGGAAGGACAGCGATGCATGTGGCAACTTCTAGTGGAAATGAGCATGGTTTAACTTTGCTTCTAAAGTTTGGTGCTGATCCAAATATCAAAGATTTGGATGGAAATATCCCACTATGGGAAGCGATGATTGGTGGACATAAATCTGTCGAGAAAATTCTCATAAAATATGGTGCAAGCTTATTTTGTGCCGAAGCAGGGTATTTAGCATACTCTGCAGCTGAGAGAAATAGCATTGAATTGCTTAAGGAACTCATAGAACTTGGCGTGGATGTGTCAAAACCCAACAAGCATGGAGGAAGCACTGCCCTACACGCAGCAGTAAGTGAAGGCAATACCGAGATGGTGAGGCTACTTTTAGACCAAGGAGCTGACGTTGACAAAAAAGATGGCGTTGGCTGGACTCCACGGGGTTTGGCAGATCATCAAGGCCACGAAGAAATTATATTGATATTCCAAAATATTAAAGAGAAAAAAGAAGAAGTATCTGATGTTCCAATACCAGAAAATGGTACGCCTAATGTGCCTTACAGGGGAAAGTTTCAAAGTCAACCTGTTATGCCTGCTGTTCTTGGATCCAAAAAAAGCAGCTTGCTACCTCGACCTACTCCTGTTCTTGGATCCCAAGAAAGCTTGCTATTGTCATCTACTCATGACGAGTTGCCATGGCTAGATAGTCATCGAAGGCAAAGGGCGAACACCTTTCGTAATTCAATTTTCGGGATGATCGCTGCTGCCAATCGTAGTAAGAAAGGTTTTAAGGTATCTGAAAGCATCATCGCTAATACCGAGAACGTGCATGGATTAGTAGCTAGAGTGACACTTAGTTGTCCTGAAATAGGTGAACATGGTGGAAAGCTTTCTTTTCTGCCCAAGTCCCTTAAAGAACTGCTAGACATTGGTGCCAAAAAGTTTAACATCTCACCCACCAAAATTTTGAATAAAGAAGGAGCTTTAATTGACGATATAGATCTTATAAAAGATGGTGATCACCTTATTATTGCTAGTGACTGA 2712 0.4115 MKILYKSVDNASFRERKIMNVIEDDTHYNNIFDDGGSQYSLTGFALPPLGGLGPLKPKLRRFIISPNNYYYRRWQSFLAALVFYSAWVSPFELGFLNEPSMFLSIADNVVNGLFFVDIGLTFFVAYHDKSTYLFEDRFGRIACRYLRSWFLLDVVSSIPYEAVREIIHQNVKTYGYFSLLRLWRLRRVGSMFARLEKDRHYNYFWLRCAKLACVTLFVTHFAACFYFLIADTYVKDRSTTWLALIPDVDNQSTMALYIISLYWSIFTLSSVGYGDVHPVNKWEMLYCFVYCLVNVGFGSYLIGNMTNLVVHSTRRTMKYRDTVQAATKFAHRNRVPVRLEEQMLSHLLMKYKTDLEGVQQQEIIDSLPKAIRSSISYCLFYRLMDGVYLFDGVSKDLIFQLVTEMKAEYIPPKQDVIMENEAPADFYLFVTGGAELIKLENGVENVVGEVNAGELVGEIGVLCYRPHPYTARAKRLSQVLRLSRTVFLNLINSSVGDGTVIMNNFLNHLQASTIPGMDVIFVETQAMLARGKTDLPIGTYFAAIRNDNKMLELLLRNGSDLTEADRNGRTAMHVATSSGNEHGLTLLLKFGADPNIKDLDGNIPLWEAMIGGHKSVEKILIKYGASLFCAEAGYLAYSAAERNSIELLKELIELGVDVSKPNKHGGSTALHAAVSEGNTEMVRLLLDQGADVDKKDGVGWTPRGLADHQGHEEIILIFQNIKEKKEEVSDVPIPENGTPNVPYRGKFQSQPVMPAVLGSKKSSLLPRPTPVLGSQESLLLSSTHDELPWLDSHRRQRANTFRNSIFGMIAAANRSKKGFKVSESIIANTENVHGLVARVTLSCPEIGEHGGKLSFLPKSLKELLDIGAKKFNISPTKILNKEGALIDDIDLIKDGDHLIIASD 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04052 903 FunFam Potassium channel KAT3 73 311 - -
Vifa2g04052 903 CDD CAP_ED 389 491 IPR000595 -
Vifa2g04052 903 Gene3D - 537 720 IPR036770 -
Vifa2g04052 903 Pfam Cyclic nucleotide-binding domain 410 493 IPR000595 -
Vifa2g04052 903 PRINTS Ankyrin repeat signature 681 695 IPR002110 GO:0005515
Vifa2g04052 903 PRINTS Ankyrin repeat signature 568 583 IPR002110 GO:0005515
Vifa2g04052 903 SUPERFAMILY cAMP-binding domain-like 314 509 IPR018490 -
Vifa2g04052 903 Pfam Ion transport protein 73 316 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa2g04052 903 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Vifa2g04052 903 SMART ANK_2a 600 629 IPR002110 GO:0005515
Vifa2g04052 903 SMART ANK_2a 631 660 IPR002110 GO:0005515
Vifa2g04052 903 SMART ANK_2a 534 563 IPR002110 GO:0005515
Vifa2g04052 903 SMART ANK_2a 567 596 IPR002110 GO:0005515
Vifa2g04052 903 SMART ANK_2a 665 694 IPR002110 GO:0005515
Vifa2g04052 903 Gene3D Jelly Rolls 355 514 IPR014710 -
Vifa2g04052 903 ProSiteProfiles Ankyrin repeat profile. 567 599 IPR002110 GO:0005515
Vifa2g04052 903 Pfam Ankyrin repeats (3 copies) 541 626 IPR002110 GO:0005515
Vifa2g04052 903 Pfam Ankyrin repeats (3 copies) 639 716 IPR002110 GO:0005515
Vifa2g04052 903 FunFam Potassium channel KAT2 378 513 - -
Vifa2g04052 903 SUPERFAMILY Ankyrin repeat 540 720 IPR036770 -
Vifa2g04052 903 ProSiteProfiles KHA domain profile. 838 903 IPR021789 -
Vifa2g04052 903 ProSiteProfiles Ankyrin repeat region circular profile. 567 598 - -
Vifa2g04052 903 Gene3D - 65 311 - -
Vifa2g04052 903 ProSiteProfiles cAMP/cGMP binding motif profile. 389 508 IPR000595 -
Vifa2g04052 903 SMART cnmp_10 389 506 IPR000595 -
Vifa2g04052 903 PRINTS EAG/ELK/ERG potassium channel family signature 257 274 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04052 903 PRINTS EAG/ELK/ERG potassium channel family signature 107 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04052 903 PRINTS EAG/ELK/ERG potassium channel family signature 301 310 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa2g04052 903 ProSiteProfiles Ankyrin repeat region circular profile. 665 696 - -
Vifa2g04052 903 SUPERFAMILY Voltage-gated potassium channels 68 310 - -
Vifa2g04052 903 Pfam KHA, dimerisation domain of potassium ion channel 838 900 IPR021789 -
Vifa2g04052 903 PANTHER POTASSIUM CHANNEL AKT1 38 901 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04052 Vifa-Chr2 1188095363 1188100278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04052 23 903 Ion Channels AT2G25600 52.086 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04052 K21867 - gmx:100786870 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04052 2 1188095363 1188100278 Vifa2g04052 2 1188095363 1188100278 ECH