Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04034 ATGGCGAAGAAAAAGAATCCCTTGGTGTTTATGGATGTATCTATTGATGGGGATCCGGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCTCCAAAGACGGCAGAAAATTTCCGTGCATTATGTACAGGAGAGAGAGGTATTGGTCCTAATACTGGAAAATTGTTGCACTACAAGAGTTCGTTCTTCCATCGTGTTATAAAAGGCTCCATCGTGAAGGGTGGTGATTTTGTCAATCGTAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTAAAGCATGATGCTCCAGGGCTTTTAACGATGGCAATTGTTGACCGTGACAAACTTGGGTCTCATTTTATTATCACTTTGAAAGCTGATCATCATCTTGATAGCAGGAAGCATGTAGTCTTTGGAAAGCTTGTTGAAGGGCTTCAAGTATTGAGGAGAATTGAAGATGTGGGTGATGATGAAGGACATCCAATTGTAACTGTTAAAATTATTTATTGCGGTGAATATAATGAGGATGGGAAGAAAGTTAACAAATCAAAAGCAGGAAAGGATGGGAAAAAGCACAAAAGATCTGCAAAAGACAGAAGGAAAAAGAGAAGATACAGCTCATCTGAATCGGAGAGTTCTTCGGATTCAGACACAGAATCTTCAGAAACTGATAGTGATTCTGACTCCGATATGTCTTCGTCATCTGATACAAGTTCCTCTAGTGATGATAGACGAAAAAAGAGAAAGAGATCTAAGAAAGACAAATATAAACGTGGAAAAAAGAGAGATAAACGCCGTGACAGAAGGCGAAAAAGACTAGATAAGAGATCGAAGCATAGATCAAAAAGGGAATCTGGCAGTGATTCAGATAGTGAGAGTGACAGTAGCTCTGACGGTGAAAGTCTTGATACTCAACAGAAAGTGCTGAAGCGAAAAGATCGTTCTCAGAAGAAAGCTGAAGTTAAGTCTTCCCCAGTTGTGGAGAAAGACGTGCCTACCATTCATCATGAAAAGGAAGAGGCAGGTAAGCCCGAGAGTAAGCCAAAAATAATAAAGGAAAATGGAGAGCGGCATACCAATGGTACTGGAGCTGCATATAGATCTGAGAGAAGTGAAGAGATGCAGCCTGATGTGATGGATGATCATTTGGGTAAATATAGGAGTCGAAGCATTAGTCCTAAACGACCCACAAGTAAGAGCATGAGTATTAGTCCCCGGAGGAGTAGGAGCAAGAGCCGTAGTATTACCCCAAAAAGAAGAATGAGCAAAAGCCCATCTGTTAGTAGAAGCCCTCCTCTCCAGTCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGGAGCATCAACAGGAGTCCTGATAGAAGCATTGGTAGGAGTCCAAGCAGAAGCATTGTCAACAGGAGCCCAGTGAGGAGCAGAAAGGGGAGAAATGTCAGTAGAAGTCCTGTTATATCTCGTCCTCTTAGAAGTGTCAGCAAGAGCCCTGTTAGATCCCGCCGAAGCAAGAGTTCTCCCAGATCATTAAGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGTCGCAGTCCAATTAGATTTCCTTCAAGAAGCGTCAGCAAAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGTAGTCCAATTAGATCACCTGCAAGAAGCTTAAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGTAGTCCAGTTAGATCACGGGTAAGAAGCTTAAGCAGAAGCCCGGGTAGGGTCCCTTCAAAGAGAAGCATCAGCAGAAGTCCTGTCAGAGCACCAAGTAGAAGCCATCGCCGCAGTTATTCTAGGAGTCCTAGCCCTGTTCGTAGGAGGACACTTCGTGGGGGTAATTTGTCTAGGAGTGCTTCACCCGATGCTTCACCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGCGAGCGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTCGGTCTCCAGTGAGGTCAAACCGGTACAATGGTAGAATTGATCGTGACAGATATTCAAGTTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGAGGAAGAACTCCTCCAAGGTACCGAAAGAGGAGCAGAACACCATCTGTGTCGCCCAACCCACGCCACCGAGCTCGGAGATATAGCAGAAGCCGCAGCCCAATTCTCACCCGCTCTCCAGTTCGGAGTACTTCCCCCGATCGATCACGCCCCTCTCGTGTAGAAAGGCATTCATCATTTTCTCGGAGCAGAAGCAGGAGTTTACCTAAGTCCAGGTCTTCTGTAGAATCACCATCTCCACGAAAAGTAAGTCGAGACAGAAGGTCAAAGTCATCATCCAAAAGCCCAGATGGAAAGAAAGGCTTGGTCTCATATGGCGATGGTTCTCCTGACTCAGACTAA 2439 0.4481 MAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGIGPNTGKLLHYKSSFFHRVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLTMAIVDRDKLGSHFIITLKADHHLDSRKHVVFGKLVEGLQVLRRIEDVGDDEGHPIVTVKIIYCGEYNEDGKKVNKSKAGKDGKKHKRSAKDRRKKRRYSSSESESSSDSDTESSETDSDSDSDMSSSSDTSSSSDDRRKKRKRSKKDKYKRGKKRDKRRDRRRKRLDKRSKHRSKRESGSDSDSESDSSSDGESLDTQQKVLKRKDRSQKKAEVKSSPVVEKDVPTIHHEKEEAGKPESKPKIIKENGERHTNGTGAAYRSERSEEMQPDVMDDHLGKYRSRSISPKRPTSKSMSISPRRSRSKSRSITPKRRMSKSPSVSRSPPLQSRRSLSRSPVRSINRSPDRSIGRSPSRSIVNRSPVRSRKGRNVSRSPVISRPLRSVSKSPVRSRRSKSSPRSLRKTISRSPVRVSRKSISRSPIRFPSRSVSKSPVRVSRKSVSRSPIRSPARSLSRSPVRVSRKSVSRSPVRSRVRSLSRSPGRVPSKRSISRSPVRAPSRSHRRSYSRSPSPVRRRTLRGGNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSNRYNGRIDRDRYSSYRRYSPRRFRSPPPRGRTPPRYRKRSRTPSVSPNPRHRARRYSRSRSPILTRSPVRSTSPDRSRPSRVERHSSFSRSRSRSLPKSRSSVESPSPRKVSRDRRSKSSSKSPDGKKGLVSYGDGSPDSD 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04034 812 MobiDBLite consensus disorder prediction 187 204 - -
Vifa2g04034 812 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 510 584 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 731 746 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 495 509 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 778 794 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 591 605 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 422 474 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 747 761 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 307 359 - -
Vifa2g04034 812 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 174 IPR002130 GO:0000413|GO:0003755
Vifa2g04034 812 MobiDBLite consensus disorder prediction 673 688 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 640 660 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 763 777 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 248 282 - -
Vifa2g04034 812 SUPERFAMILY Cyclophilin-like 4 177 IPR029000 -
Vifa2g04034 812 Gene3D - 1 176 IPR029000 -
Vifa2g04034 812 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 IPR002130 GO:0000413|GO:0003755
Vifa2g04034 812 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vifa2g04034 812 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vifa2g04034 812 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vifa2g04034 812 MobiDBLite consensus disorder prediction 394 413 - -
Vifa2g04034 812 MobiDBLite consensus disorder prediction 180 812 - -
Vifa2g04034 812 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 183 - -
Vifa2g04034 812 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 175 IPR002130 GO:0000413|GO:0003755
Vifa2g04034 812 MobiDBLite consensus disorder prediction 373 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04034 Vifa-Chr2 1182339407 1182344483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04034 26 171 U-box Gene Family AT5G67530 39.865 1.89e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04034 K09566 - gmx:100785820 322.013