Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04033 ATGGCGAAGAAAAAGAATCCCTTGGTGTTTATGGATGTATCTATTGATGGGGATCCGGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCTCCAAAGACGGCAGAAAATTTCCGTGCATTATGTACAGGAGAGAGAGGTATTGGTCCTAATACTGGAAAATTGTTGCACTACAAGAGTTCGTTCTTCCATCGTGTTATAAAAGGCTCCATCGTGAAGGGTGGTGATTTTGTCAATCGTAATGTCACTTCCTTTGTGTTTTTTTATTATTTGATCATTCAGTTGTCCGAGTTGCAAGCCTTGTTCCATTTGCATGTTTCCTGTGACGATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTAAAGCATGATGCTCCAGGGCTTTTAACGATGGCAATTGTTGACCGTGACAAACTTGGGTCTCATTTTATTATCACTTTGAAAGCTGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGAAAGCTTGTTGAAGGGCTTCAAGTATTGAGGAGAATTGAAGATGTGGGTGATGATGAAGGACATCCAATTGTAACTGTTAAAATTATTTATTGCGGTGAATATAATGAGGATGGGAAGAAAGTTAACAAATCAAAAGCAGGAAAGGATGGGAAAAAGCACAAAAGATCTGCAAAAGACAGAAGGAAAAAGAGAAGATACAGCTCATCTGAATCGGAGAGTTCTTCGGATTCAGACACAGAATCTTCAGAAACTGATAGTGATTCTGACTCCGATATGTCTTCGTCATCTGATACAAGTTCCTCTAGTGATGATAGACGAAAAAAGAGAAAGAGATCTAAGAAAGACAAATATAAACGTGGAAAAAAGAGAGATAAACGCCGTGACAGAAGGCGAAAAAGACTAGATAAGAGATCGAAGCATAGATCAAAAAGGGAATCTGGCAGTGATTCAGATAGTGAGAGTGACAGTAGCTCTGACGGTGAAAGTCTTGATACTCAACAGAAAGTGCTGAAGCGAAAAGATCGTTCTCAGAAGAAAGCTGAAGTTAAGTCTTCCCCAGTTGTGGAGAAAGACGTGCCTACCATTCATCATGAAAAGGAAGAGGCAGGTAAGCCCGAGAGTAAGCCAAAAATAATAAAGGAAAATGGAGAGCGGCATACCAATGGTACTGGAGCTGCATATAGATCTGAGAGAAGTGAAGAGATGCAGCCTGATGTGATGGATGATCATTTGGGTAAATATAGGAGTCGAAGCATTAGTCCTAAACGACCCACAAGTAAGAGCATGAGTATTAGTCCCCGGAGGAGTAGGAGCAAGAGCCGTAGTATTACCCCAAAAAGAAGAATGAGCAAAAGCCCATCTGTTAGTAGAAGCCCTCCTCTCCAGTCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGGAGCATCAACAGGAGTCCTGATAGAAGCATTGGTAGGAGTCCAAGCAGAAGCATTGTCAACAGGAGCCCAGTGAGGAGCAGAAAGGGGAGAAATGTCAGTAGAAGTCCTGTTATATCTCGTCCTCTTAGAAGTGTCAGCAAGAGCCCTGTTAGATCCCGCCGAAGCAAGAGTTCTCCCAGATCATTAAGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGTCGCAGTCCAATTAGATTTCCTTCAAGAAGCGTCAGCAAAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGTAGTCCAATTAGATCACCTGCAAGAAGCTTAAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGTAGTCCAGTTAGATCACGGGTAAGAAGCTTAAGCAGAAGCCCGGGTAGGGTCCCTTCAAAGAGAAGCATCAGCAGAAGTCCTGTCAGAGCACCAAGTAGAAGCCATCGCCGCAGTTATTCTAGGAGTCCTAGCCCTGTTCGTAGGAGGACACTTCGTGGGGGTAATTTGTCTAGGAGTGCTTCACCCGATGCTTCACCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGCGAGCGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTCGGTCTCCAGTGAGGTCAAACCGGTACAATGGTAGAATTGATCGTGACAGATATTCAAGTTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGAGGAAGAACTCCTCCAAGGTACCGAAAGAGGAGCAGAACACCATCTGTGTCGCCCAACCCACGCCACCGAGCTCGGAGATATAGCAGAAGCCGCAGCCCAATTCTCACCCGCTCTCCAGTTCGGAGTACTTCCCCCGATCGATCACGCCCCTCTCGTGTAGAAAGGCATTCATCATTTTCTCGGAGCAGAAGCAGGAGTTTACCTAAGTCCAGGTCTTCTGTAGAATCACCATCTCCACGAAAAGTAAGTCGAGACAGAAGGTCAAAGTCATCATCCAAAAGCCCAGATGGAAAGAAAGGCTTGGTCTCATATGGCGATGGTTCTCCTGACTCAGACTAA 2523 0.4455 MAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGIGPNTGKLLHYKSSFFHRVIKGSIVKGGDFVNRNVTSFVFFYYLIIQLSELQALFHLHVSCDDGTGGESIYGSNFPDESPRLKHDAPGLLTMAIVDRDKLGSHFIITLKADHHLDRKHVVFGKLVEGLQVLRRIEDVGDDEGHPIVTVKIIYCGEYNEDGKKVNKSKAGKDGKKHKRSAKDRRKKRRYSSSESESSSDSDTESSETDSDSDSDMSSSSDTSSSSDDRRKKRKRSKKDKYKRGKKRDKRRDRRRKRLDKRSKHRSKRESGSDSDSESDSSSDGESLDTQQKVLKRKDRSQKKAEVKSSPVVEKDVPTIHHEKEEAGKPESKPKIIKENGERHTNGTGAAYRSERSEEMQPDVMDDHLGKYRSRSISPKRPTSKSMSISPRRSRSKSRSITPKRRMSKSPSVSRSPPLQSRRSLSRSPVRSINRSPDRSIGRSPSRSIVNRSPVRSRKGRNVSRSPVISRPLRSVSKSPVRSRRSKSSPRSLRKTISRSPVRVSRKSISRSPIRFPSRSVSKSPVRVSRKSVSRSPIRSPARSLSRSPVRVSRKSVSRSPVRSRVRSLSRSPGRVPSKRSISRSPVRAPSRSHRRSYSRSPSPVRRRTLRGGNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSNRYNGRIDRDRYSSYRRYSPRRFRSPPPRGRTPPRYRKRSRTPSVSPNPRHRARRYSRSRSPILTRSPVRSTSPDRSRPSRVERHSSFSRSRSRSLPKSRSSVESPSPRKVSRDRRSKSSSKSPDGKKGLVSYGDGSPDSD 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04033 840 MobiDBLite consensus disorder prediction 759 774 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 209 840 - -
Vifa2g04033 840 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 203 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 215 232 - -
Vifa2g04033 840 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vifa2g04033 840 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vifa2g04033 840 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 151 163 IPR002130 GO:0000413|GO:0003755
Vifa2g04033 840 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 179 IPR002130 GO:0000413|GO:0003755
Vifa2g04033 840 MobiDBLite consensus disorder prediction 538 612 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 523 537 - -
Vifa2g04033 840 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 203 IPR002130 GO:0000413|GO:0003755
Vifa2g04033 840 MobiDBLite consensus disorder prediction 806 822 - -
Vifa2g04033 840 SUPERFAMILY Cyclophilin-like 4 205 IPR029000 -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 668 688 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 450 502 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 619 633 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 335 387 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 791 805 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 701 716 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 775 789 - -
Vifa2g04033 840 Gene3D - 1 204 IPR029000 -
Vifa2g04033 840 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 202 IPR002130 GO:0000413|GO:0003755
Vifa2g04033 840 MobiDBLite consensus disorder prediction 401 419 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 276 310 - -
Vifa2g04033 840 MobiDBLite consensus disorder prediction 422 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04033 Vifa-Chr2 1182339407 1182344483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04033 26 199 U-box Gene Family AT5G67530 33.523 1.78e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04033 K09566 - gmx:100785820 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04033 2 1182339407 1182344483 Vifa2g04033 2 1182339407 1182344483 ECH