Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04019 ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCTTTGTTAAAGAGAAGGGTGTGGTTAGGGACATTTGAGACAGCAGAGGCGGCTGCAAGAGCTTATGATCAAGCTGCAATTTTGATGAATGGTCAGAGTGCGAAGACTAATTTCCCCAAGACTCAAGGTGAAGATGCTATTGACACTACTTGTGGTAGCGGTGGAGGTAGTGGAGGTGGTGGAGGTGGTGGGAATGACTCTTTCTTGTCTCCCAAGGCACTCTCTGAGCTACTCAGCACAAAGCTTAGAAAATATTGCAAAGACCCTTCTCCGTCACTCACTTGTTTGAGGCTAGATACTGATAATTCTCACATTGGAGTGTGGCAAAAAAGAGCTGGATCACATTCGGATTCGAATTGGGTCATGAGGGTTGAGCTTGGCGGGAAGAAAAAAACCGCCGAGTCAGAGTCAGAGATAGGATCTTCGCAACACATTATCAATGGTAATAATGGTAATGCAGATATTGAAAATAGGGTGGTAGTAGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCATGTGGTTCGACTTCAAGCGATTAA 642 0.4502 MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPKTQGEDAIDTTCGSGGGSGGGGGGGNDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDTDNSHIGVWQKRAGSHSDSNWVMRVELGGKKKTAESESEIGSSQHIINGNNGNADIENRVVVEEEERVALQMIEELLNWNYPCGSTSSD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04019 213 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Vifa2g04019 213 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vifa2g04019 213 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vifa2g04019 213 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Vifa2g04019 213 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vifa2g04019 213 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vifa2g04019 213 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 156 - -
Vifa2g04019 213 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vifa2g04019 213 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vifa2g04019 213 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04019 Vifa-Chr2 1179185020 1179185794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04019 4 206 AP2-EREBP Transcription Factor Family AT5G25390 57.561 2.03e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g04019 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04019 - - lang:109326202 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04019 2 1179185020 1179185794 Vifa2g04019 2 1179185020 1179185794 ECH