Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04018 ATGCCTCAGCTGCTACATGGGATGCTTACGGTAACCATAAGGGAAGCTGACAGGTTACAATCCGGATGTAGTTTGGCTTTTTGTCACAAGGGGACAACACACAAGGGGAAGAGATTTCTGGCCCAAGTCAAAGGTTGTCTCTTGTGCCGGCCTGAGATTGTTGGGACAAGACTCTATGCAACAGTTGATTTAGATAAGGCACGAGTTGGACGAACCAGAACGATAGGGAATCAACCTTCAAATCCCAAATGGAACGAAACGTTTGAAATCTATTGTGCTCATTACATATCAAACCTTGTATTCACTGTCAAAGATGGTAATCCAATTGGAGCAACTCTAATTGGAAGAGCTTATATTCCTACCGAAAAAGTTCTCAAAGGAAATATAATTGACAGATGGGTTGAGATATTAGACGAAGAAGATCTTCGCCCTGTACCAGGTGGTTCTAAAATCCGTGTTAGTATGCATTTTTCTAGTGTCACTGAGGACAGAACATGTCTATGGTCTCAGGGAATACACATGCCATTTTTGGGAGTTCCACGAATATTTTTCGACCAGAGACAAGGCTGTAGTGTTACTTTATACCAAGATGCTCACGTTCCTGATAGTATTCATCCGTGGATTCCAATATCCGGAACAAAATCTTATATTCCTGGAAGATGTTGGGAGGATATTTACAATGCAATTATGGATGCTAAACACTTTATTTACATAACAGGTTGGTCTGTTCATACTGAAATAACCTTGATTAGGGACCCAAAAAAGTCAACCGAAACTAGTAATAGTATCACTCTTGGAGAAATGCTCAAGAGAAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAAAACTTCTGTTCCAGGTTTTAAGGAGGACGGTTTGATGGGAACACATGACCAAGAAACTGCATATTACTTTAGAAACACAAAGGTACATTGCGTTTTATGTCCGCGTAATCCTGATGGTGGAAGAAGCATAGTTCAAGGTTTTCAGATTTCAACAATGTTCACTCATCACCAAAAGACTATAGTTGTTGATGGTCATCATGTTGATGGTCATCATGTTGAAGGATCAAAGAAACGAACCGTTATCAGTTTCGTAGGTGGACTCGATCTGTGTGATGGGAGATATGATACAATGGAACACCCTTTGTTTTCAACATTGAATACAGTTCATCATGATGATTTTCATCAGCCCAATTTCCCGGGTGCTTCTATTAAGAAAGGCGGTCCTAGAGAACCGTGGCATGATATTCATTGTAAGCTAGAAGGACCTGTTGCATGGGATGTGTTGTACAATTTTGAGCAAAGATGGGAAAAGCAAGTTGGGAAGCAATTTCTATTACCAATAGAATTGCTTGATAGAATTCTAATCCACCCTTCTGATGCAATGATATCAGAAGAAGATGGAGACACTTGGAGTGTTCAGTTGTTTAGGTCCATAGATGGTGGTGCTGTTTCTCACTTCCCTCAAGCACCAGATGAAGCTATTAAATTAGGCCTTGTTAGTGGAAAAGATAACATCATTGATAGAAGCATTCAGGATGCCTACATAAACGCTATTCGACGAGCTAAAAACTTCATCTACATTGAAAATCAGTACTTCCTAGGGAGTTCTTATGGTTGGAAAGCATCTGATATTAAAGTTGAAGATATCGGTGCTTTGCATCTCATACCAAAGGAACTTTCATTGAAGATTGTTAGCAAGATTGAAGCGGGAGAGAGGTTTGTTGTGTATGTGGTGATACCAATGTGGCCAGAAGGTATACCGGAAAGTGCATCAGTTCAGGCGATATTGGATTGGCAAAGAAGGACCATGGAGATGATGTATTCTGATATCGCTGATGCAATAAAAAAGAAGAATATCGAAGCACACCCTCGTGATTATTTGACATTTTATTGCCTCGGCAAAAGGGAGAGTAAGAAAGACGGAGAGTATACTCCTCCAGAGGAACCAAAGCCTAACACTGACTATCATAGCGCACAAAAGTCTAGAAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATACTGATTGGTTCAGCCAACATAAACCAAAGATCAATGGACGGTGGAAGAGACACAGAGATAGCAATGGGAGCATTCCAGCCGCATCACCTAGCATCCATTGGGCCACAAAGAGCACAAGGTCAAATTTACGGGTTCAGAAGAGCATTATGGTATGAACATACTGGTGGTAACAGTGAAGATTTTGATGAACCTGAAAGTTTGGAATGTGTGAAACTTGTGAATCGTGTTGCTGAGAGAAATTGGAAATTATACTGTGATGATACATTAGATGAAAGTGTAACTACTCACCTTTTGAGGTATCCTGTTGAAGTGGGAGAAGATGGAAGTGTAACATCAATTCCAGGGATGCAGTATTTTCCTGACACTAAGGCTTTGATTGTTGGTGCCAAATCTGAATTGCTTCCTCCAATTCTTACCACTTAG 2484 0.403 MPQLLHGMLTVTIREADRLQSGCSLAFCHKGTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRTIGNQPSNPKWNETFEIYCAHYISNLVFTVKDGNPIGATLIGRAYIPTEKVLKGNIIDRWVEILDEEDLRPVPGGSKIRVSMHFSSVTEDRTCLWSQGIHMPFLGVPRIFFDQRQGCSVTLYQDAHVPDSIHPWIPISGTKSYIPGRCWEDIYNAIMDAKHFIYITGWSVHTEITLIRDPKKSTETSNSITLGEMLKRKANEGVNVLMLVWDDKTSVPGFKEDGLMGTHDQETAYYFRNTKVHCVLCPRNPDGGRSIVQGFQISTMFTHHQKTIVVDGHHVDGHHVEGSKKRTVISFVGGLDLCDGRYDTMEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWEKQVGKQFLLPIELLDRILIHPSDAMISEEDGDTWSVQLFRSIDGGAVSHFPQAPDEAIKLGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKASDIKVEDIGALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIADAIKKKNIEAHPRDYLTFYCLGKRESKKDGEYTPPEEPKPNTDYHSAQKSRRFMIYVHSKMMIVDDEYILIGSANINQRSMDGGRDTEIAMGAFQPHHLASIGPQRAQGQIYGFRRALWYEHTGGNSEDFDEPESLECVKLVNRVAERNWKLYCDDTLDESVTTHLLRYPVEVGEDGSVTSIPGMQYFPDTKALIVGAKSELLPPILTT 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04018 827 Gene3D C2 domain 3 158 IPR035892 -
Vifa2g04018 827 Gene3D Endonuclease Chain A 483 718 - -
Vifa2g04018 827 CDD C2_plant_PLD 1 157 - -
Vifa2g04018 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 158 IPR035892 -
Vifa2g04018 827 FunFam Phospholipase D 484 717 - -
Vifa2g04018 827 PANTHER PHOSPHOLIPASE D 4 815 IPR015679 -
Vifa2g04018 827 SUPERFAMILY Phospholipase D/nuclease 505 756 - -
Vifa2g04018 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 671 698 IPR001736 GO:0003824
Vifa2g04018 827 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Vifa2g04018 827 PIRSF PLD_plant 1 827 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa2g04018 827 SUPERFAMILY Phospholipase D/nuclease 179 452 - -
Vifa2g04018 827 Pfam C2 domain 8 136 IPR000008 -
Vifa2g04018 827 Pfam Phospholipase D Active site motif 338 380 IPR001736 GO:0003824
Vifa2g04018 827 Pfam Phospholipase D Active site motif 672 698 IPR001736 GO:0003824
Vifa2g04018 827 Gene3D Endonuclease Chain A 211 453 - -
Vifa2g04018 827 Pfam Phospholipase D C terminal 746 817 IPR024632 -
Vifa2g04018 827 SMART pld_4 671 698 IPR001736 GO:0003824
Vifa2g04018 827 SMART pld_4 338 380 IPR001736 GO:0003824
Vifa2g04018 827 SMART C2_3c 8 133 IPR000008 -
Vifa2g04018 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 338 380 IPR001736 GO:0003824
Vifa2g04018 827 FunFam Phospholipase D delta 212 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04018 Vifa-Chr2 1178655520 1178659144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04018 3 827 Phospholipase D Gene Family (Wang group) AT3G15730 62.335 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04018 K01115 - gmx:100794115 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04018 2 1178655520 1178659144 Vifa2g04018 2 1178655520 1178659144 ECH
Vifa2g04017 2 1178639795 1178642988 Vifa2g04018 2 1178655520 1178659144 ECH