Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04017 ATGGTGTTTCACTTGCTGCATGGGAAGCTTGATGTTACTATATATGAGGTCGATTCATTACAAACACTTCGAGCATTCAGTTTCGATATCGGCAACAAGGGAGCATATACAACCATGGGGAAGAAAATTCTGTCACAGCTCAAAAATTGCATTACGTGTCAATGCCAATTCCAACCAGAGAATATTATTGGGATGGGTCTATATGCAACAGTTGATTTGGACAAAGCAAGAGTTGGAAGAACTAGGATGATAAATAACCAACCCTTCAACCCTAAATGGAATGAAAACTTTCACATTTACTCAGCTCATTCAATCTCCAACATTATATTCACTGTCAAACAAGATAACCCTATTGGTGCAACTCTAATAGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAATGGAAACACAGTAAACACATGGGCTCAAATACTAGATGTGAATCAAAAGCCTATACAAGGTGGTTCCAAAATCCATGTCCAAATAAAATACTCACATGTTAAGAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCAACCTTTGAAGGGGTTCCTCACACTTTCTTTAAACAAAATAATGGTTGTCAAATCACTCTTTACCAAGATGCACATGTTCTAGACGATTCTCTTCCGTCTATACCGTTAGACGGAGGAGAACATTACGTCCCGGGAAAATGTTGGGAAGATGTTTACAATGCTATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTACACTGAAATCACATTGGTTAGAGATCAAAACAAGTCAACAAGAACAAGTATCACACTTGGAGAGCTTCTCAAGAAGAAAGCTAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGATTTTAAGAAAGATGGCTTGATGGGAACACATGATCAAGAAACTAATGAGTATTTCAAAAACACAAATGTGCTTTGTGTTTTGTGTCCGCGGAATCCCGGTGTTGGAAGAAGTATAGTTCAAGGTTTCGAAACTTCAACAATGTTCACTCATCATCAGAAGACTATAATTGTTGACAGTAGAGTTGTTGGTTCTGCACAATGGAATAAGAGATCAATCACTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGAAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGAATACTGTCCATCATGATGATTTTCATCAACCAAATTTCCCGGGTGCTTCGATTAAGAAAGGCGGTCCGAGAGAGCCATGGCATGATATTCACTGTAAACTGGAAGGACCTGTTGCATGGGATGTATTGTGCAATTTTGAGCAAAGATGGGAGAAGCAAGTTGGGAGGCAATTGGTTCCACTACCTTCAAGCATGCTTGGTGAATATGGTATTACTCGTGGATTGAATGTAGCAACTACGAATGAAAACAATACATGGAATGTTCAGTTGTTTAGATCCATCGATGGCGGTGCTGCTTCCGGCTTCCCTCAAGATCCAAGAGAAGCTTGTGAATTAGGCCTTGTTAGTGGAAAAGATAACATCATTGATAGAAGCATTCAAGACGCGTACATAAACGCTATTCGACGAGCGAAAAACTTCATCTACATTGAAAACCAGTATTTTCTAGGTAGTTCATATGGTTGGAAATCATCTGATATAAAAGTCGAAGACATCGGCGCTTTGCATCTCATACCAAAGGAACTCTCATTGAAGATTGTTAGCAAGATTGAAGCAGGAGAGAGATTTTCTGTGTACATTGTAATTCCAATGTGGCCAGAAGGTGTACCTGAAAGTGCTTCTGTTCAAGCTATACTAGATTGGCAAAGAAGGACTATGGAAATGATGTATTCTGACATCGCTGAAGCTCTTCAAAGAAAAGGAATCAGAGCTAATCCAAGAGATTACTTGACTTTCTTTTGTCTCGGAAATCGAGAAGGAATGAAAATGAATGAATATACTCCTACAGAAACACCAGAACAAGACAGTGATTATAGTAGAGCACAAAATTCTAGAAGATTCATGATATATGTTCATGCCAAAATGATGATAGTTGATGATGAGTACATAATCATTGGTTCAGCAAACATAAACCAAAGATCAATGGATGGTGCTAGAGACAGTGAGATTGCAATAGGTGCATTTCAACCAGGCCACATAGCAACCAATAATAGGCCACCAAAAGGACAAATCTATGCATTTAGACGTTCACTATGGTATGAGCACCTTGGAGATATAGGTGACACAAGTTTCTTTGATAATCCAGAAAGTTCAAACTGCATAAAGCTTGTGAATCGTTTTGCTGAGACCAATTGGGATGTATACTCAAAAGATGCATTTGATGAACGCAGAACATTTCATCACCTCATGAGATATCCAATACAAGTAGCTAATAATGGAGCCATAACAACTCTTCCAGGATTTGAATATTTTCCTGATACTAAGGCTAGGATTTTAGGTTCTAAGTCTGAGTATCTTCCTCCAATTCTCACCACTTAA 2499 0.3834 MVFHLLHGKLDVTIYEVDSLQTLRAFSFDIGNKGAYTTMGKKILSQLKNCITCQCQFQPENIIGMGLYATVDLDKARVGRTRMINNQPFNPKWNENFHIYSAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVINGNTVNTWAQILDVNQKPIQGGSKIHVQIKYSHVKNDPNWSQGLKSPTFEGVPHTFFKQNNGCQITLYQDAHVLDDSLPSIPLDGGEHYVPGKCWEDVYNAINDAKHFICITGWSVYTEITLVRDQNKSTRTSITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMGTHDQETNEYFKNTNVLCVLCPRNPGVGRSIVQGFETSTMFTHHQKTIIVDSRVVGSAQWNKRSITSFVGGIDLCDGRYDTMEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLCNFEQRWEKQVGRQLVPLPSSMLGEYGITRGLNVATTNENNTWNVQLFRSIDGGAASGFPQDPREACELGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGVPESASVQAILDWQRRTMEMMYSDIAEALQRKGIRANPRDYLTFFCLGNREGMKMNEYTPTETPEQDSDYSRAQNSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPGHIATNNRPPKGQIYAFRRSLWYEHLGDIGDTSFFDNPESSNCIKLVNRFAETNWDVYSKDAFDERRTFHHLMRYPIQVANNGAITTLPGFEYFPDTKARILGSKSEYLPPILTT 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04017 832 Gene3D C2 domain 4 168 IPR035892 -
Vifa2g04017 832 Pfam Phospholipase D C terminal 751 822 IPR024632 -
Vifa2g04017 832 Gene3D Endonuclease Chain A 221 458 - -
Vifa2g04017 832 PANTHER PHOSPHOLIPASE D 5 821 IPR015679 -
Vifa2g04017 832 SMART pld_4 674 701 IPR001736 GO:0003824
Vifa2g04017 832 SMART pld_4 343 382 IPR001736 GO:0003824
Vifa2g04017 832 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 167 IPR035892 -
Vifa2g04017 832 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Vifa2g04017 832 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 674 701 IPR001736 GO:0003824
Vifa2g04017 832 SMART C2_3c 9 142 IPR000008 -
Vifa2g04017 832 Pfam Phospholipase D Active site motif 675 701 IPR001736 GO:0003824
Vifa2g04017 832 Pfam Phospholipase D Active site motif 343 382 IPR001736 GO:0003824
Vifa2g04017 832 PIRSF PLD_plant 1 832 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa2g04017 832 FunFam Phospholipase D 487 720 - -
Vifa2g04017 832 SUPERFAMILY Phospholipase D/nuclease 171 454 - -
Vifa2g04017 832 Pfam C2 domain 9 144 IPR000008 -
Vifa2g04017 832 Gene3D Endonuclease Chain A 483 717 - -
Vifa2g04017 832 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 343 382 IPR001736 GO:0003824
Vifa2g04017 832 SUPERFAMILY Phospholipase D/nuclease 520 744 - -
Vifa2g04017 832 CDD C2_plant_PLD 5 165 - -
Vifa2g04017 832 FunFam Phospholipase D delta 219 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04017 Vifa-Chr2 1178639795 1178642988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04017 1 832 Phospholipase D Gene Family (Wang group) AT3G15730 62.919 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04017 K01115 - gmx:100791688 1295.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05565 2 1653451458 1653455394 Vifa2g04017 2 1178639795 1178642988 ECH
Vifa2g04017 2 1178639795 1178642988 Vifa2g05565 2 1653451458 1653455394 ECH
Vifa2g04017 2 1178639795 1178642988 Vifa2g04017 2 1178639795 1178642988 ECH
Vifa2g04017 2 1178639795 1178642988 Vifa2g04018 2 1178655520 1178659144 ECH
Vifa2g04017 2 1178639795 1178642988 Vifa2g05565 2 1653451458 1653455394 PCT