Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04009 ATGGCAAAAAAACATTTGTTTTTCTCCTACGTTGTTGATCTCTCTATCTTAATCCTCTTCATGTCAAAGCCATGTTTCTGTGGTACCCAATACATCGGCAAAATCTTACCTGGGACACAAGGTTCACAAATGAACTGGATTGACAGAGACGGTAAATTCCTCCTCTCAAAAAACCTAAATTTCGCTTTCAGTTTCATCACCACCGTCAACGACTCCACCAAGTTTCTTCTAGTAGTCCTCCACGTATCAAGCTCCACCGTGATTTGGACTGCAAATAGAGCAAAACCTGTTTCCAATTCTGATAACATGGTCTTTGATAAAAAAGGAAATGTTTTTTTATCTAAAGATGGAATTTTGATTTGGTCTACAAACACAACTAACAAAGGGGTTTCTTCAATGGTGTTGCAGGATAATGGAAACCTGGTTTTGCTTGGGGGTGATAATAACAGTACGGTGATTTGGCAGAGTTTTGATTTTCCGACTGATACTTTGTTGCCTCAACAGGTTTTTAAGGAGGGTATGAAGCTTACTAGTGAACCTGGTTCGAATGGTTTGGTTTATGTTCTTGAGATTGAATCTGGGAATGTTGTTCTTTCTGCTGCTTTTAAGATACCTCAGGTTTATTGGACTATGCAGAAGGATAACCGGAAGACGGTTGATAAGGACGGCGATGTTGTGGTTTCGGCGAATTTAAGTGATAATTCTTGGAGATTTTATGATGAGAAGAAGGATGGTGTTATAAGTTTCAAGAATCTCAATAGTGGTGGATTGAACGGTGATTCATCGACGAGGATACCGCAGGATCCTTGTAGCACACCGGAGCCTTGTGATCCTTACAGTATATGCACGGCTAATCGTAGTAGCAGGTGTAGCTGTCTTTCTGTTGTTCCGAGCTGTAAACCTGTTTTTGTTTCTCCTTGTGATGATGGTAAACCAGGAAAATCTGTTGAACTTGTGAAAGGTGATGATGGGATTGGTTACTTTGCTCTTGATTATCTTCAGCCGTTTTCGAAAACTGATTTGGCTGGCTGTCAAACGTCGTGCCGTGGAAATTGTTCTTGTCTTGCAATGTTCTTCCATAAGAGTTCGGGAAACTGTTTCCTTTTGGAAAGTGTGGGAAGTTTTCAGAAATCTGAGAATGGTGATAATGGTTATGTTTCTTACATTAAGGTATCAAGTGATGGAGGCAAAAAAGGAAGTGGAGTTAGACCTGCACATATTGTTGTCATTGTTGTTATTGTCGTATTAACTTTGTTTGTGATTTCTGTTCTGATCTTTGTTGGGGTTAGATACTACAGGAAAAAGAAAAGGTTACCTGAATCTCCAAGAGAGAATTCAGAAGAGGACAATTTCTTGGAGAATTTAACCGGTATGCCAATCCGCTACCGATACAAAGATCTCGAAGTTGCAACTAATAACTTCTCAGTGAAGCTTGGTCAAGGAGGCTTTGGTTCAGTTTATAAAGGAGTTCTACCTGACGGAACTCAATTAGCTGTGAAGCAATTGGAAGGTATCGGTCAAGGGAAGAAAGAGTTCAGAGCCGAAGTTAGCATCATCGGAAGCATTCATCATCTTAATTTGGTAAGGCTTAAGGGATTTTGCGCAGACGGAACTCATAGGCTTTTAGTTTACGAGTATATGGCTAATAACTCGTTGGATAAATGGATATTCAAGAAGAAAAAAGGCGAATTTCTTTTGGATTGGGATACAAGGTATAACATAGCAGTAGGAACAGCGAAAGGGCTAGCATATCTGCACGAAGATTGTGACTCAAAGATTGTCCACTGTGACATAAAACCAGAAAATGTACTTCTAGACGATCATTTCATGGCTAAAGTCTCTGATTTCGGTTTAGCCAAGCTCATGAACAGAGAACAAAGCCATGTTTTCACAACACTAAGAGGAACGCGCGGATACCTTGCACCAGAGTGGATAACAAACTACGCTATATCAGAGAAAAGCGACGTATACAGCTACGGAATGGTGTTGCTAGAGATTATTGGTGGGAGGAAGAACTACGATACTAACGAGAGTTCAGAGAAAAACTATTTCCCGAGTTTTGCTTTCAAGATGATGGAGGAAGGGAAAATGAGGGACATACTTGATTCGGAGCTGAAAATTGATGAGCATGATGATAGGGTACATTGTGCTATAAGGGTTGCATTGTGGTGTATACAAGAAGACATGTCAATGAGACCATCAATGACAAAGGTTGTTCAAATGTTGGAAGGTCTTTGTACTGTTCCTAAACCACCAACTAGTTCTTATTTGGGTTCTAGACTTTATGCAAATGTGTTTAAATCATCTAGTGAAGGAGGAAATTCTTCTGGTCCATCAGATTGTAATAGTGATCCTTATTTATTAGCAGTTCGTCTTTCTGGCCCAAGATAA 2391 0.399 MAKKHLFFSYVVDLSILILFMSKPCFCGTQYIGKILPGTQGSQMNWIDRDGKFLLSKNLNFAFSFITTVNDSTKFLLVVLHVSSSTVIWTANRAKPVSNSDNMVFDKKGNVFLSKDGILIWSTNTTNKGVSSMVLQDNGNLVLLGGDNNSTVIWQSFDFPTDTLLPQQVFKEGMKLTSEPGSNGLVYVLEIESGNVVLSAAFKIPQVYWTMQKDNRKTVDKDGDVVVSANLSDNSWRFYDEKKDGVISFKNLNSGGLNGDSSTRIPQDPCSTPEPCDPYSICTANRSSRCSCLSVVPSCKPVFVSPCDDGKPGKSVELVKGDDGIGYFALDYLQPFSKTDLAGCQTSCRGNCSCLAMFFHKSSGNCFLLESVGSFQKSENGDNGYVSYIKVSSDGGKKGSGVRPAHIVVIVVIVVLTLFVISVLIFVGVRYYRKKKRLPESPRENSEEDNFLENLTGMPIRYRYKDLEVATNNFSVKLGQGGFGSVYKGVLPDGTQLAVKQLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEYMANNSLDKWIFKKKKGEFLLDWDTRYNIAVGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDTNESSEKNYFPSFAFKMMEEGKMRDILDSELKIDEHDDRVHCAIRVALWCIQEDMSMRPSMTKVVQMLEGLCTVPKPPTSSYLGSRLYANVFKSSSEGGNSSGPSDCNSDPYLLAVRLSGPR 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04009 796 ProSiteProfiles Protein kinase domain profile. 472 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04009 796 Gene3D Transferase(Phosphotransferase) domain 1 547 750 - -
Vifa2g04009 796 SUPERFAMILY Putative isomerase YbhE 115 396 - -
Vifa2g04009 796 SUPERFAMILY Protein kinase-like (PK-like) 453 743 IPR011009 -
Vifa2g04009 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 44 753 - -
Vifa2g04009 796 SMART serkin_6 472 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04009 796 Pfam D-mannose binding lectin 86 170 IPR001480 -
Vifa2g04009 796 CDD B_lectin 47 160 IPR001480 -
Vifa2g04009 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Vifa2g04009 796 ProSitePatterns Protein kinases ATP-binding region signature. 478 500 IPR017441 GO:0005524
Vifa2g04009 796 FunFam Serine/threonine-protein kinase 41 158 - -
Vifa2g04009 796 SMART blect_4 45 160 IPR001480 -
Vifa2g04009 796 PIRSF SRK 5 790 IPR024171 GO:0004674
Vifa2g04009 796 FunFam serine/threonine-protein kinase PBS1-like 440 546 - -
Vifa2g04009 796 Gene3D - 44 158 IPR036426 -
Vifa2g04009 796 FunFam S-receptor-like kinase 5 547 751 - -
Vifa2g04009 796 ProSiteProfiles Bulb-type lectin domain profile. 39 156 IPR001480 -
Vifa2g04009 796 Pfam Protein kinase domain 476 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04009 796 Gene3D Phosphorylase Kinase; domain 1 437 546 - -
Vifa2g04009 796 CDD STKc_IRAK 478 745 - -
Vifa2g04009 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 211 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04009 Vifa-Chr2 1176117821 1176120284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04009 414 754 Receptor kinase-like Gene Family AT5G20050 47.383 1.04e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g04009 Pkinase 1.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04009 - - tpra:123882999 1194.49