Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03960 ATGGAGTATCAATTCAACGACCCTTATGAAACTTCCATTGATCCAAGTTTCTTCGATACAAGTAACCCCACACTAGCAGATTTATCCATTACTGACAACAATGCACCCCACCAAAATCATCATGGAGTATTTCAACAGTCTCATGATACTGACTTTAATCATATATTTTCCAACCATAATGAAATACGTCAACATGGACATAATACTAATGATGATTTCGCAATGTCACAAAATGATTCATTTGACTACAATGTAATGTCATCATATCCAAATGCACAACAAGTGCAATATGATCATCAGCCAAATAATTTTTCCTTTGGACGAAATGACTTCGAAGCCGGTGCTTCATCCCAAATGCATGAGGATCAACAAACTCAACCTTTGAATCAGATTCCGGTTTTGTCGAACCAAACTGATGCAATGACACTTGATCAATGGCCACCCACACCAATTCCATATTTTTGCAGTTGTTGTCAAGTTCTCAGAGAAATCATCCACGCAAATGGTATTCAATTTGAAAAACTTGAGATTCATGGAAGGTTGGGTTTGATTACACATGCAATTCATCATCAGACACCTGTTAATGGAGACCTACCAATAAGTCAAATGATTGATTTTAGCAGAAGAAACCTTGATGAAATAAAGAATTTTCTGGCGCAATACTGCATGGACCATATTTTAGAAGGATACTTTATCCTACAAGATCCTATGTCTGCATATTATGAAACTCTTTGCACTGGATTGGATTGGATTGAAGATTTTAACATGGAGGGTCCTGTTGATAATAATCAAAATAATTCAGATGAAATTTTGGAGCGAGAGCAAGGACAACAGCATGTTGGTGAGAATGGAACTCCTACTACTGAAACACCTGATAAAAAGAACCTCTCAGAACAGAGGGAAAAGGCGGGGAAATTGACATTGAATGATTTACGCGATTATTTTCATCTACCTATTGAGGAAGCAGCGAAAACTGTAGATTTGTGTCCAACGGTTCTCAAGAAAACATGTCGTAAAGCAGGATTAGCAAGATGGCCTCACAGAAAGGTGAAAAGTCTTTTGAAGCAGATAGCATTACTAGGAACTCAATCGGAAAAACAAGTACCAGCGACAAGGGCAAGGACTGAAGAGGATATTAGCAGGCTTAAGCAAGAAATGATAGATCATTGTGGTGGACATATACCAACAGCCCTTCTTGCCACCAAACTATCAGAAGCGCCGGTAGTGCATGGTCCAATTGTTATGGAGAAGAGTGACTAA 1260 0.3841 MEYQFNDPYETSIDPSFFDTSNPTLADLSITDNNAPHQNHHGVFQQSHDTDFNHIFSNHNEIRQHGHNTNDDFAMSQNDSFDYNVMSSYPNAQQVQYDHQPNNFSFGRNDFEAGASSQMHEDQQTQPLNQIPVLSNQTDAMTLDQWPPTPIPYFCSCCQVLREIIHANGIQFEKLEIHGRLGLITHAIHHQTPVNGDLPISQMIDFSRRNLDEIKNFLAQYCMDHILEGYFILQDPMSAYYETLCTGLDWIEDFNMEGPVDNNQNNSDEILEREQGQQHVGENGTPTTETPDKKNLSEQREKAGKLTLNDLRDYFHLPIEEAAKTVDLCPTVLKKTCRKAGLARWPHRKVKSLLKQIALLGTQSEKQVPATRARTEEDISRLKQEMIDHCGGHIPTALLATKLSEAPVVHGPIVMEKSD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03960 419 PANTHER PROTEIN RKD4 93 386 IPR044607 GO:0003700
Vifa2g03960 419 Pfam RWP-RK domain 305 353 IPR003035 -
Vifa2g03960 419 MobiDBLite consensus disorder prediction 274 300 - -
Vifa2g03960 419 ProSiteProfiles RWP-RK domain profile. 287 374 IPR003035 -
Vifa2g03960 419 MobiDBLite consensus disorder prediction 278 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03960 Vifa-Chr2 1165456719 1165458418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03960 311 390 AtRKD Transcription Factor Family AT5G66990 36.905 2.05e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa2g03960 RWP-RK 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03960 - - psat:127078885 741.11