Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03950 ATGGAAACAAACAACCGAGATCAAATTGTGGATGTTGGATCGGTGGTTAAAGCTGTTTCTGCTGAGGCCGGTGATGCACCGCTTTACGCCATCGAAAGCCTCTGCATGCGTTGTCATCAAAATGGAACTACGAGATTTTTGTTTACTTCAATTCCTAACTTCATGAAGATTTTATTTTCGGCTTTTGAATGTCCTCATTGTGGTGAGAGGAACAATGAAGTGCAGTTTGCTGGTGAAATTCAACCACGAGGTTGTTGTTACTCGCTAGAGATCCCAGTGGGTGAACAAAAGATGTTCAACCGACAAGTGGTAAAATCAGAATCTGCTACCATTAAGATACCCGAACTCGATTTTGAGATTCCACCAGAGGCACAGCATGGTAGTCTGTCAACGGTTGAAGGAATACTAATGCGAGTTGCTGATGAACTTCAGGCCCTTCAAGAGGAGCGCAGAAAAGTTGCTCCAGAGACGGCTGATGCAATAGATCAGTTCCTGGTGAAGTTGCGAGCCTGTGCCACAGCTGAATCTTCCTTCACGTTTATTATTGATGATCCTGCTGGAAACAGTTACATCGAAAATCCGTTTGCACCATCAATTTCCGATTTCATCCTTTTGGGATTCTTATCAGATGCCGTGAGCTTTATCCATCGCCCTTTGCGCTTTATCTAA 669 0.4395 METNNRDQIVDVGSVVKAVSAEAGDAPLYAIESLCMRCHQNGTTRFLFTSIPNFMKILFSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIPVGEQKMFNRQVVKSESATIKIPELDFEIPPEAQHGSLSTVEGILMRVADELQALQEERRKVAPETADAIDQFLVKLRACATAESSFTFIIDDPAGNSYIENPFAPSISDFILLGFLSDAVSFIHRPLRFI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03950 222 Gene3D ZPR1, zinc finger domain 25 78 IPR042452 -
Vifa2g03950 222 Coils Coil 129 149 - -
Vifa2g03950 222 SMART zpr1 33 193 IPR004457 GO:0008270
Vifa2g03950 222 FunFam Zinc finger protein ZPR1 23 78 - -
Vifa2g03950 222 Pfam ZPR1 zinc-finger domain 33 192 IPR004457 GO:0008270
Vifa2g03950 222 Gene3D ZPR1, A/B domain 79 204 IPR042451 -
Vifa2g03950 222 NCBIfam ZPR1 zinc finger domain 35 197 IPR004457 GO:0008270
Vifa2g03950 222 PANTHER ZINC FINGER PROTEIN ZPR1 14 198 IPR040141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03950 Vifa-Chr2 1162295271 1162297231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03950 4 207 C2H2 Transcription Factor Family AT5G22480 74.634 2.72e-108 318